Non-Coding RNA Search

Ss1.1-rdbla0112_d19.5

Sequence:


               
               TTTTTAACTTCCTTATAATCAATAGTAACTGGATGTTTTTGAGGTGCTTCGATTGGAATT
AAAAATATTCCCGTCTATTTGGAGACCAAAGGCAAATTCAGTTTCATTACCTTTGGAATT
ATTCATACTTTTTGTGGTGAATTTCAGCTTTGACATTTATTGTGAGGAACATGCCAAAAA
AATAAAAAATCATTAAGAGGTTTCCAATTTGCATCTGTAAAGAAAGTGTCAATCTATGGT
GTTTTCATTTTCAGGTGCCACTTATACTGCCTAATACAGTGCCATTTGCCTTGTGAAGAT
CTGTAAACATTAGTTGTACTGAATGTAGGACAGAGACTCTGATCTCAGTGCCCCACAGAT
GATTAAGAATGATATGAAAACCAGCAGCTAAGGAACATCTTATTTAGTCGTAGCAAATTC
ATAACAAGTGTCCTTCAAGGATGAACACATTCTATTCCTGTTTGGATTTGTATTGACCTT
TTAGTGCATTATATTCAGCTTTTAAAAGTGAGTGTACGTATGTGCTGGAAGGAAAAGATC
TTAAGAGTCTCAGACTTGGCTTCTTGGTGCAACAACTGGAAAGGAGCAGTGAAGTTTATT
TTAATGGTTGTTTTTTTTCCCCCAAAGTACAATCTGTTGTTTATGTAGGACAAAAATAAT
TTTAAAAAGAAAACTTTATATAAAAATGGTTTATGAAGTTTCTCTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTAACTTCCTTATAATCAATAGTAACTGGATGTTTTTGAGGTGCTTCGATTGGAATT
AAAAATATTCCCGTCTATTTGGAGACCAAAGGCAAATTCAGTTTCATTACCTTTGGAATT
ATTCATACTTTTTGTGGTGAATTTCAGCTTTGACATTTATTGTGAGGAACATGCCAAAAA
AATAAAAAATCATTAAGAGGTTTCCAATTTGCATCTGTAAAGAAAGTGTCAATCTATGGT
GTTTTCATTTTCAGGTGCCACTTATACTGCCTAATACAGTGCCATTTGCCTTGTGAAGAT
CTGTAAACATTAGTTGTACTGAATGTAGGACAGAGACTCTGATCTCAGTGCCCCACAGAT
GATTAAGAATGATATGAAAACCAGCAGCTAAGGAACATCTTATTTAGTCGTAGCAAATTC
ATAACAAGTGTCCTTCAAGGATGAACACATTCTATTCCTGTTTGGATTTGTATTGACCTT
TTAGTGCATTATATTCAGCTTTTAAAAGTGAGTGTACGTATGTGCTGGAAGGAAAAGATC
TTAAGAGTCTCAGACTTGGCTTCTTGGTGCAACAACTGGAAAGGAGCAGTGAAGTTTATT
TTAATGGTTGTTTTTTTTCCCCCAAAGTACAATCTGTTGTTTATGTAGGACAAAAATAAT
TTTAAAAAGAAAACTTTATATAAAAATGGTTTATGAAGTTTCTCTGAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-200, + strand, RNAz p=0.999552

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-200, + strand, RNAz p=0.999552

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               24-104, + strand, RNAmicro p=0.974671

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               24-104, + strand, RNAmicro p=0.974671

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               3-170, DA472166 DFNES1 Homo sapiens cDNA clone DFNES1000169 5', mRNA 
(dbj|DA472166.1|), blast E-value=2.99878e-43, identity=89.88% 
               

               
               3-170, DA874695 PROST2 Homo sapiens cDNA clone PROST2012298 5', mRNA 
(dbj|DA874695.1|), blast E-value=2.99878e-43, identity=89.88% 
               

               
               3-172, 602594148F1 NIH_MGC_79 Homo sapiens cDNA clone IMAGE (gb|BG573138.1|), 
blast E-value=1.96182e-44, identity=90% 
               

               
               3-172, AGENCOURT_8103896 Lupski_sympathetic_trunk Homo sapiens cDNA clone 
(gb|BQ718950.1|), blast E-value=1.96182e-44, identity=90% 
               

               
               27-175, CT020018B20G05 Equine Articular Cartilage cDNA Library Equus 
(gb|CX597751.1|), blast E-value=0, identity=93.29% 
               

               
               10-175, DR010027B20E04 Canine normalized retinal cDNA library Canis 
(gb|DT542262.1|), blast E-value=0, identity=94.01%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               3-170, DA472166 DFNES1 Homo sapiens cDNA clone DFNES1000169 5', mRNA 
(dbj|DA472166.1|), blast E-value=2.99878e-43, identity=89.88% 
               

               
               3-170, DA874695 PROST2 Homo sapiens cDNA clone PROST2012298 5', mRNA 
(dbj|DA874695.1|), blast E-value=2.99878e-43, identity=89.88% 
               

               
               3-172, 602594148F1 NIH_MGC_79 Homo sapiens cDNA clone IMAGE (gb|BG573138.1|), 
blast E-value=1.96182e-44, identity=90% 
               

               
               3-172, AGENCOURT_8103896 Lupski_sympathetic_trunk Homo sapiens cDNA clone 
(gb|BQ718950.1|), blast E-value=1.96182e-44, identity=90% 
               

               
               27-175, CT020018B20G05 Equine Articular Cartilage cDNA Library Equus 
(gb|CX597751.1|), blast E-value=0, identity=93.29% 
               

               
               10-175, DR010027B20E04 Canine normalized retinal cDNA library Canis 
(gb|DT542262.1|), blast E-value=0, identity=94.01%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-708, gnl|bosTau2|chr1 (80253791-80253093)
               

               
               1-708, gnl|Hg17|chr3 (142179691-142180400)
               

               
               1-708, gnl|Mm7|chr9 (96719111-96718449)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-708, gnl|bosTau2|chr1 (80253791-80253093)
               

               
               1-708, gnl|Hg17|chr3 (142179691-142180400)
               

               
               1-708, gnl|Mm7|chr9 (96719111-96718449)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               bla (0.124347)
               

               
               ldo (0.0970026)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               bla (0.124347)
               

               
               ldo (0.0970026)

	3-170, DA472166 DFNES1 Homo sapiens cDNA clone DFNES1000169 5', mRNA (dbj\|DA472166.1\|), blast E-value=2.99878e-43, identity=89.88%
	3-170, DA874695 PROST2 Homo sapiens cDNA clone PROST2012298 5', mRNA (dbj\|DA874695.1\|), blast E-value=2.99878e-43, identity=89.88%
	3-172, 602594148F1 NIH_MGC_79 Homo sapiens cDNA clone IMAGE (gb\|BG573138.1\|), blast E-value=1.96182e-44, identity=90%
	3-172, AGENCOURT_8103896 Lupski_sympathetic_trunk Homo sapiens cDNA clone (gb\|BQ718950.1\|), blast E-value=1.96182e-44, identity=90%
	27-175, CT020018B20G05 Equine Articular Cartilage cDNA Library Equus (gb\|CX597751.1\|), blast E-value=0, identity=93.29%
	10-175, DR010027B20E04 Canine normalized retinal cDNA library Canis (gb\|DT542262.1\|), blast E-value=0, identity=94.01%

	1-708, gnl\|bosTau2\|chr1 (80253791-80253093)
	1-708, gnl\|Hg17\|chr3 (142179691-142180400)
	1-708, gnl\|Mm7\|chr9 (96719111-96718449)

	hyp (0.142837)
	nca (0.136874)
	ssp (0.13552)
	bla (0.124347)
	ldo (0.0970026)