Non-Coding RNA Search

Ss1.1-rdbla0114_c2.5

Sequence:


               
               CTCTTTCTCTCCCTCTCCTATCGGAGCACAATGAAAGCCTGTGTATCGCCGTGACTCCGG
GCAGCGGAGCCAGTGTCAGCCAAGCGGCGAACAACAGACGGGAAAGAGAAAGGAAAAGAC
CAGCTACTTTCTTTTCCATCTCTAAAGCGGAGCAATCCAAGAGGTAGAACCACATTGCTT
ATTGAGAGTCCAGACCCTCAGATCCACTGGCCGGGGATGGAATGTACAAAAGTGGACAGA
AAAGTGGCTGGACATGACTCGGTGCAATTTGCTGGAAGTTTGTAAGTTTGACCATCGTTT
GTAAATTACTCTCGGAAGAGTTTGTCTCTCTTGATACTGTATTAGAATCGAGCCGGGGGT
GAGGAATAGAAACGTAAGCGGGAAAGGAAAAAAAAAATGTGTTGAAGGATTCTCTTCTCA
GTGGCTAGTGACTTCAGACTGCTTTCATTTAAGGCTGGGAAACCTTAGAGGGAATGAGGA
TTTTTACCGGTGATTGGATTAGCTGAAGAAAAAAAGCATGGTCCAAAAGTCCAATTACTG
ACATTAACAATTGAAAAGCCGTCTCCCTCTTTGGGGAGAAGACAACATCCTACAGTACCC
CCCCCCCCCAAGAGGAGAAAACACCGGAGCGAAGGGAAAGGGAGGAAAAATTAAAAGCCA
AAAGACAGTCTCTCTTGATTTTTGTACGTTTTGAGCATTGACTTCAAAAAGCGTCTGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTTTCTCTCCCTCTCCTATCGGAGCACAATGAAAGCCTGTGTATCGCCGTGACTCCGG
GCAGCGGAGCCAGTGTCAGCCAAGCGGCGAACAACAGACGGGAAAGAGAAAGGAAAAGAC
CAGCTACTTTCTTTTCCATCTCTAAAGCGGAGCAATCCAAGAGGTAGAACCACATTGCTT
ATTGAGAGTCCAGACCCTCAGATCCACTGGCCGGGGATGGAATGTACAAAAGTGGACAGA
AAAGTGGCTGGACATGACTCGGTGCAATTTGCTGGAAGTTTGTAAGTTTGACCATCGTTT
GTAAATTACTCTCGGAAGAGTTTGTCTCTCTTGATACTGTATTAGAATCGAGCCGGGGGT
GAGGAATAGAAACGTAAGCGGGAAAGGAAAAAAAAAATGTGTTGAAGGATTCTCTTCTCA
GTGGCTAGTGACTTCAGACTGCTTTCATTTAAGGCTGGGAAACCTTAGAGGGAATGAGGA
TTTTTACCGGTGATTGGATTAGCTGAAGAAAAAAAGCATGGTCCAAAAGTCCAATTACTG
ACATTAACAATTGAAAAGCCGTCTCCCTCTTTGGGGAGAAGACAACATCCTACAGTACCC
CCCCCCCCCAAGAGGAGAAAACACCGGAGCGAAGGGAAAGGGAGGAAAAATTAAAAGCCA
AAAGACAGTCTCTCTTGATTTTTGTACGTTTTGAGCATTGACTTCAAAAAGCGTCTGAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-116, - strand, RNAz p=0.948984
               

               
               292-401, - strand, RNAz p=0.725786
               

               
               442-597, + strand, RNAz p=0.778158

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-116, - strand, RNAz p=0.948984
               

               
               292-401, - strand, RNAz p=0.725786
               

               
               442-597, + strand, RNAz p=0.778158

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AY040322, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AY040322, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-720, gnl|bosTau2|chr11 (27998159-27997439)
               

               
               1-720, gnl|Hg17|chr11 (95716000-95715293)
               

               
               1-720, gnl|Mm7|chrUn_random (724696-725422)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-720, gnl|bosTau2|chr11 (27998159-27997439)
               

               
               1-720, gnl|Hg17|chr11 (95716000-95715293)
               

               
               1-720, gnl|Mm7|chrUn_random (724696-725422)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               sto (0.179824)
               

               
               che (0.136314)
               

               
               bla (0.124347)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.179824)
               

               
               che (0.136314)
               

               
               bla (0.124347)

	1-116, - strand, RNAz p=0.948984
	292-401, - strand, RNAz p=0.725786
	442-597, + strand, RNAz p=0.778158

	1-720, gnl\|bosTau2\|chr11 (27998159-27997439)
	1-720, gnl\|Hg17\|chr11 (95716000-95715293)
	1-720, gnl\|Mm7\|chrUn_random (724696-725422)