Non-Coding RNA Search

Ss1.1-rdbla0115_a19.5

Sequence:


               
               TGTGAGCCAGGCTGTGGGTCTGAGGCAGGTTGTAGCCCAGAGAGCAGATGGCATTGCAGC
TGAGCAGCACCAGAACCATGAGGAAGGCTGAGTTTGGGGACCTTGCAGATGCTTCTGTCC
TGGCTGAGGTGGGTGACTCTGTGACCCTGCTCTCTAGGATGTCTGAAGACCTTCCCTCCG
GCCTGTGTCTTAAATAGGAACAAATTCTTTTCCATTTTCTGAATGTTTCTTTCTACATCT
GTTTCTGCTTTTTACATGAACTCTCCAAATGTGTAGGGCAGCATTTCTCAACCTTTTTTT
CATTATCACCTGCCTTTCTCCTCCCCAGACTCCTTTAAAATATTTTTTCCTTATTGCCCC
CACATTAAATTTTGATAACCAGCTGTACTATGTATCTATTTAGGTAATCCATAAATATTT
CTACTCTATGCATAGGCAAAGAAAGTGTAATACTTACTCTTTGTATTCAGTGCAGAGTTA
ACAATATCGAAAAGTTTTAAGCTACCAACTAAATGTAAAAGCTATTGAATTGAAATTTAA
GTTCATAACTAAGGTGGCAGAATGACTTTTAATGTAATATACATTTACTTATATAGTTAG
AAATGGATCAAATTTCTTATACAAATAAAAATTTATATTCATACCTGATAATAATACCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGAGCCAGGCTGTGGGTCTGAGGCAGGTTGTAGCCCAGAGAGCAGATGGCATTGCAGC
TGAGCAGCACCAGAACCATGAGGAAGGCTGAGTTTGGGGACCTTGCAGATGCTTCTGTCC
TGGCTGAGGTGGGTGACTCTGTGACCCTGCTCTCTAGGATGTCTGAAGACCTTCCCTCCG
GCCTGTGTCTTAAATAGGAACAAATTCTTTTCCATTTTCTGAATGTTTCTTTCTACATCT
GTTTCTGCTTTTTACATGAACTCTCCAAATGTGTAGGGCAGCATTTCTCAACCTTTTTTT
CATTATCACCTGCCTTTCTCCTCCCCAGACTCCTTTAAAATATTTTTTCCTTATTGCCCC
CACATTAAATTTTGATAACCAGCTGTACTATGTATCTATTTAGGTAATCCATAAATATTT
CTACTCTATGCATAGGCAAAGAAAGTGTAATACTTACTCTTTGTATTCAGTGCAGAGTTA
ACAATATCGAAAAGTTTTAAGCTACCAACTAAATGTAAAAGCTATTGAATTGAAATTTAA
GTTCATAACTAAGGTGGCAGAATGACTTTTAATGTAATATACATTTACTTATATAGTTAG
AAATGGATCAAATTTCTTATACAAATAAAAATTTATATTCATACCTGATAATAATACCAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               331-481, - strand, RNAz p=0.969113

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               331-481, - strand, RNAz p=0.969113

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-481, gnl|bosTau2|chr8 (12559632-12559132)
               

               
               1-481, gnl|Hg17|chr9 (21156509-21156994)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-481, gnl|bosTau2|chr8 (12559632-12559132)
               

               
               1-481, gnl|Hg17|chr9 (21156509-21156994)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               bla (0.248694)
               

               
               liv (0.146284)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.248694)
               

               
               liv (0.146284)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)

	1-481, gnl\|bosTau2\|chr8 (12559632-12559132)
	1-481, gnl\|Hg17\|chr9 (21156509-21156994)