Non-Coding RNA Search

Ss1.1-rdbla0115_e21.5

Sequence:


               
               GTAGTGTGGGGCCCACCGGCATCTGTAGCACCTAATACTTGGTCATCAACCAGCCCTCTG
GGAAATCCTTTTCAGAGCAATGTTTTTCCAGCTCCTGCTGTGTCAGCCCAGCCCTCTCCC
ATGCTGTCCTCTCTCCTGGCCTCTCCACCCCAACCACCTCCCAGAACTGGCCCTCCAAAG
GACATCTCCAGCGATGCCTTCGTTGCCTTGGACCCACTTGGGGACAAAGAAGTCAAAGAA
GTGAAAGAAATGTTTAAGGACCTCCAGCTGCGGCAGCCACCTACGGTGCCAGCCAGGAAG
GGAGAACAGAATTCCTCTGGGACTTCAAGTGCCTTCTCCAGTTATTTCAACAACAAAGTT
GGCATTCCTCAGGAGAATGCAGACCATGATGACTTTGACGCTAATCAGCTGTTGAGAAAG
ATCAATGAACTGCCAAAGCCAGCTCCCAGACAAGGTGCCCTGCCAGTTACCAAATCCGCT
GACACTGCATTTGAGAACCCCTTCTCTAAAGATCCTTTCCGTTCATCACAAGCCTCTATG
GCTTCTCCTCAACCCACATCTTCCGATGTATATAGGGACCCGTTTGGAAATCCTTTTGCC
TAACTCCTGAACTTGGCCTGCTGACTATCCAGAGGAACAAAAAGGTTGGCCTTAGTAGTC
AAGGACAAAGCTAATAAGCAGACAAGTCCTGACCTCTGCCCTTGTTCTAGCTTTGACATA
TTATCTGTTGCCTTATTTCTTGCTGTCTCTTCCACTTGTAGCATGCCTTCTGCTTTCTGT
TTAGCTAAGCTGAATCTATGGCTTTAAATAAATTAAGAACCTAAACTCTCTAGCTTAAAT
GTAAATGAAGTAGTTTCCCTATTTGAACCCTTGCCTATTGTGTCCCTAGAACTTTCTAGA
ACACTTTGCCATGCACCCTCTGGTTGGGCAACGCAACCACATCAACCCCTCAGATCATAC
TGTTTTGAATAAATTTTAAAATCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAGTGTGGGGCCCACCGGCATCTGTAGCACCTAATACTTGGTCATCAACCAGCCCTCTG
GGAAATCCTTTTCAGAGCAATGTTTTTCCAGCTCCTGCTGTGTCAGCCCAGCCCTCTCCC
ATGCTGTCCTCTCTCCTGGCCTCTCCACCCCAACCACCTCCCAGAACTGGCCCTCCAAAG
GACATCTCCAGCGATGCCTTCGTTGCCTTGGACCCACTTGGGGACAAAGAAGTCAAAGAA
GTGAAAGAAATGTTTAAGGACCTCCAGCTGCGGCAGCCACCTACGGTGCCAGCCAGGAAG
GGAGAACAGAATTCCTCTGGGACTTCAAGTGCCTTCTCCAGTTATTTCAACAACAAAGTT
GGCATTCCTCAGGAGAATGCAGACCATGATGACTTTGACGCTAATCAGCTGTTGAGAAAG
ATCAATGAACTGCCAAAGCCAGCTCCCAGACAAGGTGCCCTGCCAGTTACCAAATCCGCT
GACACTGCATTTGAGAACCCCTTCTCTAAAGATCCTTTCCGTTCATCACAAGCCTCTATG
GCTTCTCCTCAACCCACATCTTCCGATGTATATAGGGACCCGTTTGGAAATCCTTTTGCC
TAACTCCTGAACTTGGCCTGCTGACTATCCAGAGGAACAAAAAGGTTGGCCTTAGTAGTC
AAGGACAAAGCTAATAAGCAGACAAGTCCTGACCTCTGCCCTTGTTCTAGCTTTGACATA
TTATCTGTTGCCTTATTTCTTGCTGTCTCTTCCACTTGTAGCATGCCTTCTGCTTTCTGT
TTAGCTAAGCTGAATCTATGGCTTTAAATAAATTAAGAACCTAAACTCTCTAGCTTAAAT
GTAAATGAAGTAGTTTCCCTATTTGAACCCTTGCCTATTGTGTCCCTAGAACTTTCTAGA
ACACTTTGCCATGCACCCTCTGGTTGGGCAACGCAACCACATCAACCCCTCAGATCATAC
TGTTTTGAATAAATTTTAAAATCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61843683|ref|XP_612502.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61843683|ref|XP_612502.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-230, - strand, RNAz p=0.953406

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-230, - strand, RNAz p=0.953406

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-427, gnl|bosTau2|chr20 (21498431-21498005)
               

               
               1-427, gnl|Hg17|chr5 (39412935-39412509)
               

               
               1-427, gnl|Mm7|chr15 (6262357-6262792)
               


               
               609-984, gnl|bosTau2|chr20 (21494662-21494285)
               

               
               609-984, gnl|canFam2|chr4 (72844778-72844427)
               

               
               609-984, gnl|dasNov1|scaffold_4720 (4438-4087)
               

               
               609-984, gnl|echTel1|scaffold_313338 (53565-53191)
               

               
               609-984, gnl|hg17|chr5 (39408830-39409188)
               

               
               609-984, gnl|Hg17|chr5 (39409284-39408900)
               

               
               609-984, gnl|mm7|chr15 (6266233-6265868)
               

               
               609-984, gnl|Mm7|chr15 (6265774-6266153)
               

               
               609-984, gnl|monDom2|scaffold_20 (32185020-32184579)
               

               
               609-984, gnl|oryCun1|scaffold_201173 (240149-240501)
               

               
               609-984, gnl|panTro1|chr4 (77316699-77316341)
               

               
               609-984, gnl|rheMac2|chr6 (39192174-39192546)
               

               
               609-984, gnl|rn3|chr2 (55664231-55663864)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-427, gnl|bosTau2|chr20 (21498431-21498005)
               

               
               1-427, gnl|Hg17|chr5 (39412935-39412509)
               

               
               1-427, gnl|Mm7|chr15 (6262357-6262792)
               


               
               609-984, gnl|bosTau2|chr20 (21494662-21494285)
               

               
               609-984, gnl|canFam2|chr4 (72844778-72844427)
               

               
               609-984, gnl|dasNov1|scaffold_4720 (4438-4087)
               

               
               609-984, gnl|echTel1|scaffold_313338 (53565-53191)
               

               
               609-984, gnl|hg17|chr5 (39408830-39409188)
               

               
               609-984, gnl|Hg17|chr5 (39409284-39408900)
               

               
               609-984, gnl|mm7|chr15 (6266233-6265868)
               

               
               609-984, gnl|Mm7|chr15 (6265774-6266153)
               

               
               609-984, gnl|monDom2|scaffold_20 (32185020-32184579)
               

               
               609-984, gnl|oryCun1|scaffold_201173 (240149-240501)
               

               
               609-984, gnl|panTro1|chr4 (77316699-77316341)
               

               
               609-984, gnl|rheMac2|chr6 (39192174-39192546)
               

               
               609-984, gnl|rn3|chr2 (55664231-55663864)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cov (0.396458)
               

               
               sag (0.182715)
               

               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               eje (0.0988338)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.396458)
               

               
               sag (0.182715)
               

               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               eje (0.0988338)

	1-427, gnl\|bosTau2\|chr20 (21498431-21498005)
	1-427, gnl\|Hg17\|chr5 (39412935-39412509)
	1-427, gnl\|Mm7\|chr15 (6262357-6262792)

	609-984, gnl\|bosTau2\|chr20 (21494662-21494285)
	609-984, gnl\|canFam2\|chr4 (72844778-72844427)
	609-984, gnl\|dasNov1\|scaffold_4720 (4438-4087)
	609-984, gnl\|echTel1\|scaffold_313338 (53565-53191)
	609-984, gnl\|hg17\|chr5 (39408830-39409188)
	609-984, gnl\|Hg17\|chr5 (39409284-39408900)
	609-984, gnl\|mm7\|chr15 (6266233-6265868)
	609-984, gnl\|Mm7\|chr15 (6265774-6266153)
	609-984, gnl\|monDom2\|scaffold_20 (32185020-32184579)
	609-984, gnl\|oryCun1\|scaffold_201173 (240149-240501)
	609-984, gnl\|panTro1\|chr4 (77316699-77316341)
	609-984, gnl\|rheMac2\|chr6 (39192174-39192546)
	609-984, gnl\|rn3\|chr2 (55664231-55663864)

	cov (0.396458)
	sag (0.182715)
	ill (0.175593)
	nje (0.16592)
	sug (0.127291)
	bla (0.124347)
	cly (0.120642)
	eje (0.0988338)