Non-Coding RNA Search

Ss1.1-rdbla0115_k4.5

Sequence:


               
               GTTCCCCAGTGGCTCAGCAGGTTAAAATCCAGTGTTGTCACTGCTTTAATGTGGATCGCT
GCTGTGGTCTGGCTTTGATCCCTGGCTCCCAGAACTTCTGCATGCTGTGAGTGCAACCAA
AAAAAAGTGGCAAAATTGTCAGATGATTACTGGAGCAAAAGGAGAGTGCCGAGAAAGGGT
CTCTCTGTTCTTTGCTACTTTAGATCATACCCACATATTAACTAAAGCCAGGTAAATTAA
GCAGTTTTAATAAAATGTTGGGCCAAGTGAGTGGCAGTTGCTCTGGCCTCTAGTTCATTC
CCAACGACCAGAACTCTGATTGGCTTAAAGCCCAGCCCTGTTGTACATTCCAGCCAATCA
GGGGTTGGTTTACTCATTGACGCTAGTATTTTTAAAGTTTTTAAAAGCTGAGTACTGGGC
GCTTGCCTTTGCTTTCTTTCTCTAGGACTTTAGAAGATTGGAGAACAATGGTCGGTGGCT
GCCTAGATGTGTGGTCTGATGCAGAGTCTCTCTGAGAGCCCATTTCTCCCTTACTCCACT
AATGTTTGGTCCCCTTTCTCCAGTGCTGAGTGATGTGGAAGTTACTTAGAGGTCGTTCCA
GGTATTGTTTTAAACTGTGAATTTCAGCAGTAAGAACAGAATTCAGCATGCAAGTTATTC
CAGTAATCTATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCCCCAGTGGCTCAGCAGGTTAAAATCCAGTGTTGTCACTGCTTTAATGTGGATCGCT
GCTGTGGTCTGGCTTTGATCCCTGGCTCCCAGAACTTCTGCATGCTGTGAGTGCAACCAA
AAAAAAGTGGCAAAATTGTCAGATGATTACTGGAGCAAAAGGAGAGTGCCGAGAAAGGGT
CTCTCTGTTCTTTGCTACTTTAGATCATACCCACATATTAACTAAAGCCAGGTAAATTAA
GCAGTTTTAATAAAATGTTGGGCCAAGTGAGTGGCAGTTGCTCTGGCCTCTAGTTCATTC
CCAACGACCAGAACTCTGATTGGCTTAAAGCCCAGCCCTGTTGTACATTCCAGCCAATCA
GGGGTTGGTTTACTCATTGACGCTAGTATTTTTAAAGTTTTTAAAAGCTGAGTACTGGGC
GCTTGCCTTTGCTTTCTTTCTCTAGGACTTTAGAAGATTGGAGAACAATGGTCGGTGGCT
GCCTAGATGTGTGGTCTGATGCAGAGTCTCTCTGAGAGCCCATTTCTCCCTTACTCCACT
AATGTTTGGTCCCCTTTCTCCAGTGCTGAGTGATGTGGAAGTTACTTAGAGGTCGTTCCA
GGTATTGTTTTAAACTGTGAATTTCAGCAGTAAGAACAGAATTCAGCATGCAAGTTATTC
CAGTAATCTATT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               122-215, - strand, RNAz p=0.94342
               

               
               278-397, - strand, RNAz p=0.700337

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               122-215, - strand, RNAz p=0.94342
               

               
               278-397, - strand, RNAz p=0.700337

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               122-672, gnl|bosTau2|chr19 (36515981-36516532)
               

               
               122-672, gnl|canFam2|chr9 (24179875-24179236)
               

               
               122-672, gnl|dasNov1|scaffold_12859 (3813-4472)
               

               
               122-672, gnl|echTel1|scaffold_300147 (1607-1032)
               

               
               122-672, gnl|hg17|chr17 (37416400-37417043)
               

               
               122-672, gnl|Hg17|chr17 (37417063-37416532)
               

               
               122-672, gnl|loxAfr1|scaffold_34254 (10554-11218)
               

               
               122-672, gnl|mm7|chr11 (100722044-100722659)
               

               
               122-672, gnl|Mm7|chr11 (100722682-100722165)
               

               
               122-672, gnl|monDom2|scaffold_18 (52323655-52324312)
               

               
               122-672, gnl|oryCun1|scaffold_142078 (974-1610)
               

               
               122-672, gnl|panTro1|chr19 (40617509-40618152)
               

               
               122-672, gnl|rheMac2|chr16 (52118728-52119365)
               

               
               122-672, gnl|rn3|chr10 (89573566-89574196)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               122-672, gnl|bosTau2|chr19 (36515981-36516532)
               

               
               122-672, gnl|canFam2|chr9 (24179875-24179236)
               

               
               122-672, gnl|dasNov1|scaffold_12859 (3813-4472)
               

               
               122-672, gnl|echTel1|scaffold_300147 (1607-1032)
               

               
               122-672, gnl|hg17|chr17 (37416400-37417043)
               

               
               122-672, gnl|Hg17|chr17 (37417063-37416532)
               

               
               122-672, gnl|loxAfr1|scaffold_34254 (10554-11218)
               

               
               122-672, gnl|mm7|chr11 (100722044-100722659)
               

               
               122-672, gnl|Mm7|chr11 (100722682-100722165)
               

               
               122-672, gnl|monDom2|scaffold_18 (52323655-52324312)
               

               
               122-672, gnl|oryCun1|scaffold_142078 (974-1610)
               

               
               122-672, gnl|panTro1|chr19 (40617509-40618152)
               

               
               122-672, gnl|rheMac2|chr16 (52118728-52119365)
               

               
               122-672, gnl|rn3|chr10 (89573566-89574196)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               duo (0.172801)
               

               
               bla (0.124347)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)
               

               
               bla (0.124347)

	122-215, - strand, RNAz p=0.94342
	278-397, - strand, RNAz p=0.700337

	122-672, gnl\|bosTau2\|chr19 (36515981-36516532)
	122-672, gnl\|canFam2\|chr9 (24179875-24179236)
	122-672, gnl\|dasNov1\|scaffold_12859 (3813-4472)
	122-672, gnl\|echTel1\|scaffold_300147 (1607-1032)
	122-672, gnl\|hg17\|chr17 (37416400-37417043)
	122-672, gnl\|Hg17\|chr17 (37417063-37416532)
	122-672, gnl\|loxAfr1\|scaffold_34254 (10554-11218)
	122-672, gnl\|mm7\|chr11 (100722044-100722659)
	122-672, gnl\|Mm7\|chr11 (100722682-100722165)
	122-672, gnl\|monDom2\|scaffold_18 (52323655-52324312)
	122-672, gnl\|oryCun1\|scaffold_142078 (974-1610)
	122-672, gnl\|panTro1\|chr19 (40617509-40618152)
	122-672, gnl\|rheMac2\|chr16 (52118728-52119365)
	122-672, gnl\|rn3\|chr10 (89573566-89574196)