Non-Coding RNA Search

Ss1.1-rdbla0116_i20.5

Sequence:


               
               GGAAGGACAGTAAGTGTCCCACATGTAGCCTGAACAGCTGCCTATCATGTTGGAAATCCA
GAGCCTGTTCAGGATTGGAAATACTTCTGATTTTTAATTGACTTAAGATAGCTGTAGTTA
GATCGAATTGAGGGGCTGCATCATCAAACTATTTAATATTATTTCACTAGGGAAGACCAA
CTGGTGGCTTTTTAAAAAGCTCTTTATTGTCCTGTTTCGCCTAAAAATTTTATAATCTTT
TCCGACCATCATGCTTTTAATAATTTGAAAAAAAAAATCATGTTAGGTCTTTGTATGTAT
CTAAAATTTTTTGGTTGTGTTCTGTCTGAAATGCAGTGTGTAGCATGTCAGTAGTATGTG
TCTTTGTGTGTGTGAGTGTGTGTACACGTGCATGTGCATGCATGTTTCAATGCTGGACAC
AGAAGAGTGTTACAAGGTCCAGATTGTAAGTCCTTAAAGCAGCAGAGTGTAGAATGTGTT
ACTGTTTAGTGTTGTTATTTTAAAACCTGTTGATACTATTTAACCTATCCTGCATCAAGA
GAATTTTTCTTTATTTCTTACTCATTCAAATTTACTGAGTTTGCAAAGTTTTGTAAACTT
TTTGTTTTTAGCCTTTGTATTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGGACAGTAAGTGTCCCACATGTAGCCTGAACAGCTGCCTATCATGTTGGAAATCCA
GAGCCTGTTCAGGATTGGAAATACTTCTGATTTTTAATTGACTTAAGATAGCTGTAGTTA
GATCGAATTGAGGGGCTGCATCATCAAACTATTTAATATTATTTCACTAGGGAAGACCAA
CTGGTGGCTTTTTAAAAAGCTCTTTATTGTCCTGTTTCGCCTAAAAATTTTATAATCTTT
TCCGACCATCATGCTTTTAATAATTTGAAAAAAAAAATCATGTTAGGTCTTTGTATGTAT
CTAAAATTTTTTGGTTGTGTTCTGTCTGAAATGCAGTGTGTAGCATGTCAGTAGTATGTG
TCTTTGTGTGTGTGAGTGTGTGTACACGTGCATGTGCATGCATGTTTCAATGCTGGACAC
AGAAGAGTGTTACAAGGTCCAGATTGTAAGTCCTTAAAGCAGCAGAGTGTAGAATGTGTT
ACTGTTTAGTGTTGTTATTTTAAAACCTGTTGATACTATTTAACCTATCCTGCATCAAGA
GAATTTTTCTTTATTTCTTACTCATTCAAATTTACTGAGTTTGCAAAGTTTTGTAAACTT
TTTGTTTTTAGCCTTTGTATTTTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               298-453, - strand, RNAz p=0.742
               

               
               309-414, - strand, RNAz p=0.874312

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               298-453, - strand, RNAz p=0.742
               

               
               309-414, - strand, RNAz p=0.874312

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               29-624, gnl|bosTau2|chr18 (35560366-35559768)
               

               
               29-624, gnl|canFam2|chr1 (122374002-122373334)
               

               
               29-624, gnl|dasNov1|scaffold_2199 (108233-108875)
               

               
               29-624, gnl|echTel1|scaffold_314857 (48416-49079)
               

               
               29-624, gnl|hg17|chr19 (37665019-37665677)
               

               
               29-624, gnl|Hg17|chr19 (37665294-37665877)
               

               
               29-624, gnl|loxAfr1|scaffold_1316 (52496-51862)
               

               
               29-624, gnl|mm7|chr7 (32581061-32580515)
               

               
               29-624, gnl|Mm7|chr7 (32580814-32580192)
               

               
               29-624, gnl|monDom2|scaffold_35 (4254733-4254028)
               

               
               29-624, gnl|oryCun1|scaffold_189279 (77940-78595)
               

               
               29-624, gnl|panTro1|chr20 (34168963-34169619)
               

               
               29-624, gnl|rheMac2|chr19 (38997821-38998471)
               

               
               29-624, gnl|rn3|chr1 (88323512-88322946)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               29-624, gnl|bosTau2|chr18 (35560366-35559768)
               

               
               29-624, gnl|canFam2|chr1 (122374002-122373334)
               

               
               29-624, gnl|dasNov1|scaffold_2199 (108233-108875)
               

               
               29-624, gnl|echTel1|scaffold_314857 (48416-49079)
               

               
               29-624, gnl|hg17|chr19 (37665019-37665677)
               

               
               29-624, gnl|Hg17|chr19 (37665294-37665877)
               

               
               29-624, gnl|loxAfr1|scaffold_1316 (52496-51862)
               

               
               29-624, gnl|mm7|chr7 (32581061-32580515)
               

               
               29-624, gnl|Mm7|chr7 (32580814-32580192)
               

               
               29-624, gnl|monDom2|scaffold_35 (4254733-4254028)
               

               
               29-624, gnl|oryCun1|scaffold_189279 (77940-78595)
               

               
               29-624, gnl|panTro1|chr20 (34168963-34169619)
               

               
               29-624, gnl|rheMac2|chr19 (38997821-38998471)
               

               
               29-624, gnl|rn3|chr1 (88323512-88322946)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               bla (0.124347)
               

               
               eru (0.120048)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.124347)
               

               
               eru (0.120048)

	298-453, - strand, RNAz p=0.742
	309-414, - strand, RNAz p=0.874312

	29-624, gnl\|bosTau2\|chr18 (35560366-35559768)
	29-624, gnl\|canFam2\|chr1 (122374002-122373334)
	29-624, gnl\|dasNov1\|scaffold_2199 (108233-108875)
	29-624, gnl\|echTel1\|scaffold_314857 (48416-49079)
	29-624, gnl\|hg17\|chr19 (37665019-37665677)
	29-624, gnl\|Hg17\|chr19 (37665294-37665877)
	29-624, gnl\|loxAfr1\|scaffold_1316 (52496-51862)
	29-624, gnl\|mm7\|chr7 (32581061-32580515)
	29-624, gnl\|Mm7\|chr7 (32580814-32580192)
	29-624, gnl\|monDom2\|scaffold_35 (4254733-4254028)
	29-624, gnl\|oryCun1\|scaffold_189279 (77940-78595)
	29-624, gnl\|panTro1\|chr20 (34168963-34169619)
	29-624, gnl\|rheMac2\|chr19 (38997821-38998471)
	29-624, gnl\|rn3\|chr1 (88323512-88322946)