Ss1.1-rdbla0116_n14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGAGCCGGAGCTGGCGGGAGGGCCAGGCCCGGAGGCCCCCACCCTGGCTTGGCCGCCCCG GCCGCGGCTGAGGAGGAAGAGGAGGATGATCTCCAGATACACACGGAAGGCGGTGCCTCA GAACTTGGAGCTGAAAGGAATAACAAAACATGCTCTTAATCATCATCCCCTTCCAGAGCA GCTGGATGAAATTTCCTCTACCAATGACAGCCATGAAAAAGATACAAGTTCCCAAAGTGA GTCTGACATCACACAAGAATCACCTTTTACATCAGCTGACACTGGGAATTCAAGGTCTGC TTTTCCAAGTTATACAGGCACAGGGATCTCTACTGAAGGGAGCTCGGACTTCTCCTGGGG ATGGTGAACTTGATCAAAATGCCACTGAAAAAGTACAGGCAATGTTCACAGCCATTGATG AACTCTTGTATGAGCAGAAGTTGAGTGTACATACTAAGAGTCTACAAGAAGAGTGCCAAC AGTGGACATGTAGCTTTCCTCACCTCAGGATTCTGGGTAGGCAGATAATCACTCCAAGTG AAGGTTATAGGCTGTATCCTAGATCCCCTTCTGCTGTTTCAGCTTCACATGAGGCAACGC TATCTCAAGAAAGAGATTCTACAATATTTGGTATTAGGGGAAAGAAGTTACATTTTTCAT CTTCTTATGCTCCTAAAGGGTCTTCCATTGCCAAATCCCCTAGCTTGTGTTCCACGGAAA GAGAAGAGGAAGACTGTATAATTTTTTCTGAAGGAGTAATAGAGGAATATCTAGCATTCG ATCACACAGATATGGAAGAGGGGTTTCATGGAAAAAAATCAGAAGCAACTACAGAGAAAC AGAAATTAGGGTACCCACCCATTGCTCCATTTTACTGCATGAAAGAAGATGTCCTTGCTT ATGTGTTTGATGATGTGTGGAGCAAGGTCCTAAGCTGTATGGAGCAGCTAACACGTAGTC ATTGGGAGGGATGTGCTTCTGGTAAGGCTCCTTGTGAAAACAATATAAAAAATTGTTTAT GATTTTCCAACT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGAGCCGGAGCTGGCGGGAGGGCCAGGCCCGGAGGCCCCCACCCTGGCTTGGCCGCCCCG GCCGCGGCTGAGGAGGAAGAGGAGGATGATCTCCAGATACACACGGAAGGCGGTGCCTCA GAACTTGGAGCTGAAAGGAATAACAAAACATGCTCTTAATCATCATCCCCTTCCAGAGCA GCTGGATGAAATTTCCTCTACCAATGACAGCCATGAAAAAGATACAAGTTCCCAAAGTGA GTCTGACATCACACAAGAATCACCTTTTACATCAGCTGACACTGGGAATTCAAGGTCTGC TTTTCCAAGTTATACAGGCACAGGGATCTCTACTGAAGGGAGCTCGGACTTCTCCTGGGG ATGGTGAACTTGATCAAAATGCCACTGAAAAAGTACAGGCAATGTTCACAGCCATTGATG AACTCTTGTATGAGCAGAAGTTGAGTGTACATACTAAGAGTCTACAAGAAGAGTGCCAAC AGTGGACATGTAGCTTTCCTCACCTCAGGATTCTGGGTAGGCAGATAATCACTCCAAGTG AAGGTTATAGGCTGTATCCTAGATCCCCTTCTGCTGTTTCAGCTTCACATGAGGCAACGC TATCTCAAGAAAGAGATTCTACAATATTTGGTATTAGGGGAAAGAAGTTACATTTTTCAT CTTCTTATGCTCCTAAAGGGTCTTCCATTGCCAAATCCCCTAGCTTGTGTTCCACGGAAA GAGAAGAGGAAGACTGTATAATTTTTTCTGAAGGAGTAATAGAGGAATATCTAGCATTCG ATCACACAGATATGGAAGAGGGGTTTCATGGAAAAAAATCAGAAGCAACTACAGAGAAAC AGAAATTAGGGTACCCACCCATTGCTCCATTTTACTGCATGAAAGAAGATGTCCTTGCTT ATGTGTTTGATGATGTGTGGAGCAAGGTCCTAAGCTGTATGGAGCAGCTAACACGTAGTC ATTGGGAGGGATGTGCTTCTGGTAAGGCTCCTTGTGAAAACAATATAAAAAATTGTTTAT GATTTTCCAACT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 1-133, gnl|bosTau2|chr28 (22461717-22461849) | |
| 1-133, gnl|canFam2|chr4 (26953263-26953425) | |
| 1-133, gnl|canFam2|chr4 (26953329-26953454) | |
| 1-133, gnl|dasNov1|scaffold_94140 (6960-6840) | |
| 1-133, gnl|dasNov1|scaffold_94140 (6920-6813) | |
| 1-133, gnl|hg17|chr10 (74597992-74598131) | |
| 1-133, gnl|Hg17|chr10 (74598004-74598151) | |
| 1-133, gnl|hg17|chr15 (95100973-95101215) | |
| 1-133, gnl|loxAfr1|scaffold_16822 (45332-45185) | |
| 1-133, gnl|loxAfr1|scaffold_16822 (45287-45162) | |
| 1-133, gnl|mm7|chr14 (18004737-18004903) | |
| 1-133, gnl|mm7|chr14 (18004810-18004932) | |
| 1-133, gnl|Mm7|chr14 (18004823-18004952) | |
| 1-133, gnl|monDom2|scaffold_14 (1251608-1251736) | |
| 1-133, gnl|panTro1|chr16 (96126698-96126920) | |
| 1-133, gnl|panTro1|chr16 (96126766-96126950) | |
| 1-133, gnl|rheMac2|chr7 (76672608-76672794) | |
| 1-133, gnl|rheMac2|chr9 (63783454-63783323) | |
| 1-133, gnl|rn3|chr15 (4196511-4196389) | |
| 1-133, gnl|rn3|chr5 (995391-995584) | |
| 236-362, gnl|bosTau2|chr28 (22467766-22467892) | |
| 236-362, gnl|Hg17|chr10 (74607608-74607734) | |
| 236-362, gnl|Mm7|chr14 (18009259-18009391) | |
| 366-509, gnl|bosTau2|chr28 (22481201-22481344) | |
| 366-509, gnl|canFam2|chr4 (26988987-26989127) | |
| 366-509, gnl|canFam2|chr4 (26988977-26989134) | |
| 366-509, gnl|dasNov1|scaffold_233876 (1925-1789) | |
| 366-509, gnl|dasNov1|scaffold_8678 (55847-55676) | |
| 366-509, gnl|echTel1|scaffold_107528 (835-975) | |
| 366-509, gnl|echTel1|scaffold_107528 (825-990) | |
| 366-509, gnl|fr1|chrUn (57049065-57048896) | |
| 366-509, gnl|hg17|chr10 (74622311-74622482) | |
| 366-509, gnl|Hg17|chr10 (74622320-74622463) | |
| 366-509, gnl|hg17|chr15 (95101501-95101641) | |
| 366-509, gnl|loxAfr1|scaffold_59535 (8103-7963) | |
| 366-509, gnl|loxAfr1|scaffold_59535 (8113-7942) | |
| 366-509, gnl|mm7|chr14 (18012913-18013053) | |
| 366-509, gnl|mm7|chr14 (18012903-18013058) | |
| 366-509, gnl|Mm7|chr14 (18012912-18013055) | |
| 366-509, gnl|monDom2|scaffold_14 (1265382-1265522) | |
| 366-509, gnl|monDom2|scaffold_14 (1265372-1265543) | |
| 366-509, gnl|oryCun1|scaffold_102059 (4387-4527) | |
| 366-509, gnl|oryCun1|scaffold_102059 (4377-4548) | |
| 366-509, gnl|panTro1|chr16 (96127206-96127346) | |
| 366-509, gnl|panTro1|chr8_random (40084733-40084904) | |
| 366-509, gnl|rheMac2|chr7 (76673078-76673218) | |
| 366-509, gnl|rheMac2|chr9 (63756799-63756628) | |
| 366-509, gnl|rn3|chr15 (4189133-4188976) | |
| 366-509, gnl|rn3|chr5 (995798-995938) | |
| 366-509, gnl|tetNig1|chrUn_random (9698465-9698296) | |
| 794-1031, gnl|bosTau2|chr28 (22492852-22493089) | |
| 794-1031, gnl|Hg17|chr10 (74640015-74640255) | |
| 794-1031, gnl|Mm7|chr14 (18019820-18020059) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-133, gnl|bosTau2|chr28 (22461717-22461849) | |
| 1-133, gnl|canFam2|chr4 (26953263-26953425) | |
| 1-133, gnl|canFam2|chr4 (26953329-26953454) | |
| 1-133, gnl|dasNov1|scaffold_94140 (6960-6840) | |
| 1-133, gnl|dasNov1|scaffold_94140 (6920-6813) | |
| 1-133, gnl|hg17|chr10 (74597992-74598131) | |
| 1-133, gnl|Hg17|chr10 (74598004-74598151) | |
| 1-133, gnl|hg17|chr15 (95100973-95101215) | |
| 1-133, gnl|loxAfr1|scaffold_16822 (45332-45185) | |
| 1-133, gnl|loxAfr1|scaffold_16822 (45287-45162) | |
| 1-133, gnl|mm7|chr14 (18004737-18004903) | |
| 1-133, gnl|mm7|chr14 (18004810-18004932) | |
| 1-133, gnl|Mm7|chr14 (18004823-18004952) | |
| 1-133, gnl|monDom2|scaffold_14 (1251608-1251736) | |
| 1-133, gnl|panTro1|chr16 (96126698-96126920) | |
| 1-133, gnl|panTro1|chr16 (96126766-96126950) | |
| 1-133, gnl|rheMac2|chr7 (76672608-76672794) | |
| 1-133, gnl|rheMac2|chr9 (63783454-63783323) | |
| 1-133, gnl|rn3|chr15 (4196511-4196389) | |
| 1-133, gnl|rn3|chr5 (995391-995584) | |
| 236-362, gnl|bosTau2|chr28 (22467766-22467892) | |
| 236-362, gnl|Hg17|chr10 (74607608-74607734) | |
| 236-362, gnl|Mm7|chr14 (18009259-18009391) | |
| 366-509, gnl|bosTau2|chr28 (22481201-22481344) | |
| 366-509, gnl|canFam2|chr4 (26988987-26989127) | |
| 366-509, gnl|canFam2|chr4 (26988977-26989134) | |
| 366-509, gnl|dasNov1|scaffold_233876 (1925-1789) | |
| 366-509, gnl|dasNov1|scaffold_8678 (55847-55676) | |
| 366-509, gnl|echTel1|scaffold_107528 (835-975) | |
| 366-509, gnl|echTel1|scaffold_107528 (825-990) | |
| 366-509, gnl|fr1|chrUn (57049065-57048896) | |
| 366-509, gnl|hg17|chr10 (74622311-74622482) | |
| 366-509, gnl|Hg17|chr10 (74622320-74622463) | |
| 366-509, gnl|hg17|chr15 (95101501-95101641) | |
| 366-509, gnl|loxAfr1|scaffold_59535 (8103-7963) | |
| 366-509, gnl|loxAfr1|scaffold_59535 (8113-7942) | |
| 366-509, gnl|mm7|chr14 (18012913-18013053) | |
| 366-509, gnl|mm7|chr14 (18012903-18013058) | |
| 366-509, gnl|Mm7|chr14 (18012912-18013055) | |
| 366-509, gnl|monDom2|scaffold_14 (1265382-1265522) | |
| 366-509, gnl|monDom2|scaffold_14 (1265372-1265543) | |
| 366-509, gnl|oryCun1|scaffold_102059 (4387-4527) | |
| 366-509, gnl|oryCun1|scaffold_102059 (4377-4548) | |
| 366-509, gnl|panTro1|chr16 (96127206-96127346) | |
| 366-509, gnl|panTro1|chr8_random (40084733-40084904) | |
| 366-509, gnl|rheMac2|chr7 (76673078-76673218) | |
| 366-509, gnl|rheMac2|chr9 (63756799-63756628) | |
| 366-509, gnl|rn3|chr15 (4189133-4188976) | |
| 366-509, gnl|rn3|chr5 (995798-995938) | |
| 366-509, gnl|tetNig1|chrUn_random (9698465-9698296) | |
| 794-1031, gnl|bosTau2|chr28 (22492852-22493089) | |
| 794-1031, gnl|Hg17|chr10 (74640015-74640255) | |
| 794-1031, gnl|Mm7|chr14 (18019820-18020059) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| tbr (0.308356) | |
| cbe (0.239234) | |
| ton (0.1755) | |
| nco (0.161734) | |
| spl (0.143184) | |
| bla (0.124347) | |
| jca (0.11396) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tbr (0.308356) | |
| cbe (0.239234) | |
| ton (0.1755) | |
| nco (0.161734) | |
| spl (0.143184) | |
| bla (0.124347) | |
| jca (0.11396) |