Ss1.1-rdbla0117_b7.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGATTCCGATTACTGCTGCTTTTTACCTTATGCCTGACAGTGGTTGGGTGGGCCACCAGT AACTACTTTGTGGGTGCCATTCAAGACATTCCTAAAGCAAAGGAGCTCATGGCTAATTTC AACAAGGGTATAGTTTGGGGGAAGAAAGGAACTGTGACAGATGAAGCATCTGTGAAAAAA GCAGACCTTGACAACTGCCCTTCTGTGTCTCCATACCTCAAAGGCCAGACCAAGCTTGTT TTCAAACCAGATCTCACTCTGGAAGAAGTACGGGCAGAAAACCCCAAAGTGCACAGAGGC CGGTATCACCCGGAGGAATGCAGGGCTGTGCAGCGGGTGGCCATCCTGATTCCTCACCGG CACAGAGAGAAGCACCTACTGTACCTGCTGGAACACCTTCACCCCTTCCTGCAGAGGCAG CAGCTGGACTATGGCATCTACATCATCCACCAGGCTGGAAATAAAAAGTTTAATCGCGCC ATACTCCTGAATGTGGGCTATCTAGAAGCTCTTAAGGATGAAAACTGGGACTGCTTTATA TTCCATGATGTGGACCTGGTGCCTGAGAATGACTGGAACATTTACAGGTGTGAGGATCAG CCCAAGCATCTGGTGGTTGGCAGGAACAGCACTGGGTACAGGTTACGGTACAGTGGATAT TTTGGGGGTGTTACTGCCCTAAGCCGAGAGCAATTTTTCAAGGTGAATGGATTCTCTAAC AACTACTGGGGATGGGGAGGCGAAGACGATGACCTCAGACTCAGGGTTGAGCTTCATAGA ATGAAAATAATCCGGCCACTACCTGAAGTGGGTAAATATACTATGATCTTTCACAAGAGA GACCAAGGCAACGAGGTGAATATAGAACGGATGAAGCTCTTACATCAAGTGTCACGTGTC TGGAGAACAGAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGATTCCGATTACTGCTGCTTTTTACCTTATGCCTGACAGTGGTTGGGTGGGCCACCAGT AACTACTTTGTGGGTGCCATTCAAGACATTCCTAAAGCAAAGGAGCTCATGGCTAATTTC AACAAGGGTATAGTTTGGGGGAAGAAAGGAACTGTGACAGATGAAGCATCTGTGAAAAAA GCAGACCTTGACAACTGCCCTTCTGTGTCTCCATACCTCAAAGGCCAGACCAAGCTTGTT TTCAAACCAGATCTCACTCTGGAAGAAGTACGGGCAGAAAACCCCAAAGTGCACAGAGGC CGGTATCACCCGGAGGAATGCAGGGCTGTGCAGCGGGTGGCCATCCTGATTCCTCACCGG CACAGAGAGAAGCACCTACTGTACCTGCTGGAACACCTTCACCCCTTCCTGCAGAGGCAG CAGCTGGACTATGGCATCTACATCATCCACCAGGCTGGAAATAAAAAGTTTAATCGCGCC ATACTCCTGAATGTGGGCTATCTAGAAGCTCTTAAGGATGAAAACTGGGACTGCTTTATA TTCCATGATGTGGACCTGGTGCCTGAGAATGACTGGAACATTTACAGGTGTGAGGATCAG CCCAAGCATCTGGTGGTTGGCAGGAACAGCACTGGGTACAGGTTACGGTACAGTGGATAT TTTGGGGGTGTTACTGCCCTAAGCCGAGAGCAATTTTTCAAGGTGAATGGATTCTCTAAC AACTACTGGGGATGGGGAGGCGAAGACGATGACCTCAGACTCAGGGTTGAGCTTCATAGA ATGAAAATAATCCGGCCACTACCTGAAGTGGGTAAATATACTATGATCTTTCACAAGAGA GACCAAGGCAACGAGGTGAATATAGAACGGATGAAGCTCTTACATCAAGTGTCACGTGTC TGGAGAACAGAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 3-220, gnl|bosTau2|chr1 (40987204-40986987) | |
| 3-220, gnl|canFam2|chr33 (25960890-25961226) | |
| 3-220, gnl|dasNov1|scaffold_6215 (16939-16613) | |
| 3-220, gnl|echTel1|scaffold_232102 (324-4) | |
| 3-220, gnl|galGal2|chr1 (74735500-74735142) | |
| 3-220, gnl|hg17|chr3 (120431319-120431653) | |
| 3-220, gnl|Hg17|chr3 (120431601-120431384) | |
| 3-220, gnl|loxAfr1|scaffold_26266 (4685-4362) | |
| 3-220, gnl|mm7|chr16 (38462467-38462147) | |
| 3-220, gnl|Mm7|chr16 (38462197-38462414) | |
| 3-220, gnl|monDom2|scaffold_24 (15702782-15703094) | |
| 3-220, gnl|oryCun1|scaffold_181940 (1390-1685) | |
| 3-220, gnl|panTro1|chr2 (122147119-122147453) | |
| 3-220, gnl|rheMac2|chr2 (39253530-39253865) | |
| 3-220, gnl|rn3|chr11 (63847674-63847996) | |
| 221-454, gnl|bosTau2|chr11 (2463106-2462873) | |
| 221-454, gnl|canFam2|chr33 (25958252-25958449) | |
| 221-454, gnl|danRer3|chr17 (39411049-39411246) | |
| 221-454, gnl|dasNov1|scaffold_6215 (19807-19610) | |
| 221-454, gnl|echTel1|scaffold_284067 (43243-43046) | |
| 221-454, gnl|fr1|chrUn (4715952-4715757) | |
| 221-454, gnl|galGal2|chr1 (74737052-74736848) | |
| 221-454, gnl|hg17|chr3 (120428340-120428537) | |
| 221-454, gnl|Hg17|chr3 (120428578-120428345) | |
| 221-454, gnl|loxAfr1|scaffold_26266 (7823-7626) | |
| 221-454, gnl|mm7|chr16 (38464174-38463977) | |
| 221-454, gnl|Mm7|chr16 (38463934-38464167) | |
| 221-454, gnl|monDom2|scaffold_24 (15683673-15683870) | |
| 221-454, gnl|oryCun1|scaffold_194466 (2563-2366) | |
| 221-454, gnl|panTro1|chr2 (122144140-122144337) | |
| 221-454, gnl|rheMac2|chr2 (39250567-39250764) | |
| 221-454, gnl|rn3|chr11 (63845469-63845666) | |
| 221-454, gnl|tetNig1|chr7 (4269252-4269447) | |
| 221-454, gnl|xenTro1|scaffold_159 (246973-247173) | |
| 639-765, gnl|bosTau2|chr11 (2428034-2427908) | |
| 639-765, gnl|canFam2|chr33 (25949916-25950056) | |
| 639-765, gnl|danRer3|chr17 (39401947-39402070) | |
| 639-765, gnl|dasNov1|scaffold_182455 (3991-4104) | |
| 639-765, gnl|echTel1|scaffold_316262 (47242-47382) | |
| 639-765, gnl|fr1|chrUn (4716518-4716371) | |
| 639-765, gnl|galGal2|chr1 (74743587-74743461) | |
| 639-765, gnl|hg17|chr3 (120420163-120420303) | |
| 639-765, gnl|Hg17|chr3 (120420312-120420186) | |
| 639-765, gnl|loxAfr1|scaffold_26266 (19375-19235) | |
| 639-765, gnl|mm7|chr16 (38473230-38473092) | |
| 639-765, gnl|Mm7|chr16 (38473081-38473207) | |
| 639-765, gnl|monDom2|scaffold_24 (15675770-15675908) | |
| 639-765, gnl|oryCun1|scaffold_194466 (13717-13577) | |
| 639-765, gnl|panTro1|chr2 (122135967-122136107) | |
| 639-765, gnl|rheMac2|chr2 (39242436-39242576) | |
| 639-765, gnl|rn3|chr11 (63836494-63836646) | |
| 639-765, gnl|tetNig1|chr7 (4268732-4268866) | |
| 639-765, gnl|xenTro1|scaffold_159 (245473-245620) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-220, gnl|bosTau2|chr1 (40987204-40986987) | |
| 3-220, gnl|canFam2|chr33 (25960890-25961226) | |
| 3-220, gnl|dasNov1|scaffold_6215 (16939-16613) | |
| 3-220, gnl|echTel1|scaffold_232102 (324-4) | |
| 3-220, gnl|galGal2|chr1 (74735500-74735142) | |
| 3-220, gnl|hg17|chr3 (120431319-120431653) | |
| 3-220, gnl|Hg17|chr3 (120431601-120431384) | |
| 3-220, gnl|loxAfr1|scaffold_26266 (4685-4362) | |
| 3-220, gnl|mm7|chr16 (38462467-38462147) | |
| 3-220, gnl|Mm7|chr16 (38462197-38462414) | |
| 3-220, gnl|monDom2|scaffold_24 (15702782-15703094) | |
| 3-220, gnl|oryCun1|scaffold_181940 (1390-1685) | |
| 3-220, gnl|panTro1|chr2 (122147119-122147453) | |
| 3-220, gnl|rheMac2|chr2 (39253530-39253865) | |
| 3-220, gnl|rn3|chr11 (63847674-63847996) | |
| 221-454, gnl|bosTau2|chr11 (2463106-2462873) | |
| 221-454, gnl|canFam2|chr33 (25958252-25958449) | |
| 221-454, gnl|danRer3|chr17 (39411049-39411246) | |
| 221-454, gnl|dasNov1|scaffold_6215 (19807-19610) | |
| 221-454, gnl|echTel1|scaffold_284067 (43243-43046) | |
| 221-454, gnl|fr1|chrUn (4715952-4715757) | |
| 221-454, gnl|galGal2|chr1 (74737052-74736848) | |
| 221-454, gnl|hg17|chr3 (120428340-120428537) | |
| 221-454, gnl|Hg17|chr3 (120428578-120428345) | |
| 221-454, gnl|loxAfr1|scaffold_26266 (7823-7626) | |
| 221-454, gnl|mm7|chr16 (38464174-38463977) | |
| 221-454, gnl|Mm7|chr16 (38463934-38464167) | |
| 221-454, gnl|monDom2|scaffold_24 (15683673-15683870) | |
| 221-454, gnl|oryCun1|scaffold_194466 (2563-2366) | |
| 221-454, gnl|panTro1|chr2 (122144140-122144337) | |
| 221-454, gnl|rheMac2|chr2 (39250567-39250764) | |
| 221-454, gnl|rn3|chr11 (63845469-63845666) | |
| 221-454, gnl|tetNig1|chr7 (4269252-4269447) | |
| 221-454, gnl|xenTro1|scaffold_159 (246973-247173) | |
| 639-765, gnl|bosTau2|chr11 (2428034-2427908) | |
| 639-765, gnl|canFam2|chr33 (25949916-25950056) | |
| 639-765, gnl|danRer3|chr17 (39401947-39402070) | |
| 639-765, gnl|dasNov1|scaffold_182455 (3991-4104) | |
| 639-765, gnl|echTel1|scaffold_316262 (47242-47382) | |
| 639-765, gnl|fr1|chrUn (4716518-4716371) | |
| 639-765, gnl|galGal2|chr1 (74743587-74743461) | |
| 639-765, gnl|hg17|chr3 (120420163-120420303) | |
| 639-765, gnl|Hg17|chr3 (120420312-120420186) | |
| 639-765, gnl|loxAfr1|scaffold_26266 (19375-19235) | |
| 639-765, gnl|mm7|chr16 (38473230-38473092) | |
| 639-765, gnl|Mm7|chr16 (38473081-38473207) | |
| 639-765, gnl|monDom2|scaffold_24 (15675770-15675908) | |
| 639-765, gnl|oryCun1|scaffold_194466 (13717-13577) | |
| 639-765, gnl|panTro1|chr2 (122135967-122136107) | |
| 639-765, gnl|rheMac2|chr2 (39242436-39242576) | |
| 639-765, gnl|rn3|chr11 (63836494-63836646) | |
| 639-765, gnl|tetNig1|chr7 (4268732-4268866) | |
| 639-765, gnl|xenTro1|scaffold_159 (245473-245620) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| bla (0.124347) | |
| eep (0.122564) | |
| med (0.116252) |