Non-Coding RNA Search

Ss1.1-rdbla0118_l20.5

Sequence:


               
               GAAGATAAATCCTGGAGAGCCAGCTTGTTTAAAGCGTACACTTTGTCGGTGAAGCCATCT
CTTCAGCACAAACATCACGTTCACGTCTCTTTGGGCCATGTGAGCCCACTCTGGGGTCTT
GGCCCTGGCCCTCTCACTCTGTGGCAGCAGAGTAGCATCTATCAGCAGCTGCTAATTCAG
TGCTGGCTCAGTGATGCATCCTACAATGGGCAGGGTGACGAGACCAAGGAACAGGTCCCT
GGGCTTTGCTAAGCATCGCCAGATGTCATCATTAGGACATATCAGCAGTAAGAGTGCTGA
TTGTGTTGTACTGGAGAATCACAGTCAGCTTCTTTTTCCTAATTATGAAGGAGGTATATA
TCTGAAAACATTTAAAATAATATATTAGCCATATAGAATGTCAAGGTTAACATAGTTCCC
AGATCTGAAAGAAAAGGTAATATTAACTTGGATGTTCTGTATGCTCTCTGAAGAAAGGTC
TGGGAATAGTCATCATTTACTAGATTTATCAGGAATGACATAAGAGGATGTGAGCTCTTT
GGAGCGGGGAGGAGGGCATCAATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGATAAATCCTGGAGAGCCAGCTTGTTTAAAGCGTACACTTTGTCGGTGAAGCCATCT
CTTCAGCACAAACATCACGTTCACGTCTCTTTGGGCCATGTGAGCCCACTCTGGGGTCTT
GGCCCTGGCCCTCTCACTCTGTGGCAGCAGAGTAGCATCTATCAGCAGCTGCTAATTCAG
TGCTGGCTCAGTGATGCATCCTACAATGGGCAGGGTGACGAGACCAAGGAACAGGTCCCT
GGGCTTTGCTAAGCATCGCCAGATGTCATCATTAGGACATATCAGCAGTAAGAGTGCTGA
TTGTGTTGTACTGGAGAATCACAGTCAGCTTCTTTTTCCTAATTATGAAGGAGGTATATA
TCTGAAAACATTTAAAATAATATATTAGCCATATAGAATGTCAAGGTTAACATAGTTCCC
AGATCTGAAAGAAAAGGTAATATTAACTTGGATGTTCTGTATGCTCTCTGAAGAAAGGTC
TGGGAATAGTCATCATTTACTAGATTTATCAGGAATGACATAAGAGGATGTGAGCTCTTT
GGAGCGGGGAGGAGGGCATCAATC

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               83-174, - strand, RNAz p=0.899584
               

               
               115-227, - strand, RNAz p=0.638201
               

               
               446-564, + strand, RNAz p=0.912379

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               83-174, - strand, RNAz p=0.899584
               

               
               115-227, - strand, RNAz p=0.638201
               

               
               446-564, + strand, RNAz p=0.912379

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               2-564, gnl|bosTau2|chr18 (13884419-13883858)
               

               
               2-564, gnl|canFam2|chr5 (83359931-83359437)
               

               
               2-564, gnl|echTel1|scaffold_319253 (49161-49571)
               

               
               2-564, gnl|hg17|chr16 (67893234-67893730)
               

               
               2-564, gnl|Hg17|chr16 (67893339-67893903)
               

               
               2-564, gnl|loxAfr1|scaffold_101071 (1955-1460)
               

               
               2-564, gnl|mm7|chr8 (105612352-105612723)
               

               
               2-564, gnl|monDom2|scaffold_23 (4972132-4971683)
               

               
               2-564, gnl|oryCun1|scaffold_141494 (12078-12491)
               

               
               2-564, gnl|panTro1|chr18 (62233935-62234431)
               

               
               2-564, gnl|rheMac2|chr20 (67679145-67679647)
               

               
               2-564, gnl|rn3|chr19 (36872231-36872564)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-564, gnl|bosTau2|chr18 (13884419-13883858)
               

               
               2-564, gnl|canFam2|chr5 (83359931-83359437)
               

               
               2-564, gnl|echTel1|scaffold_319253 (49161-49571)
               

               
               2-564, gnl|hg17|chr16 (67893234-67893730)
               

               
               2-564, gnl|Hg17|chr16 (67893339-67893903)
               

               
               2-564, gnl|loxAfr1|scaffold_101071 (1955-1460)
               

               
               2-564, gnl|mm7|chr8 (105612352-105612723)
               

               
               2-564, gnl|monDom2|scaffold_23 (4972132-4971683)
               

               
               2-564, gnl|oryCun1|scaffold_141494 (12078-12491)
               

               
               2-564, gnl|panTro1|chr18 (62233935-62234431)
               

               
               2-564, gnl|rheMac2|chr20 (67679145-67679647)
               

               
               2-564, gnl|rn3|chr19 (36872231-36872564)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cut (0.169924)
               

               
               cje (0.165235)
               

               
               bla (0.124347)
               

               
               clu (0.119646)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               bla (0.124347)
               

               
               clu (0.119646)

	83-174, - strand, RNAz p=0.899584
	115-227, - strand, RNAz p=0.638201
	446-564, + strand, RNAz p=0.912379

	2-564, gnl\|bosTau2\|chr18 (13884419-13883858)
	2-564, gnl\|canFam2\|chr5 (83359931-83359437)
	2-564, gnl\|echTel1\|scaffold_319253 (49161-49571)
	2-564, gnl\|hg17\|chr16 (67893234-67893730)
	2-564, gnl\|Hg17\|chr16 (67893339-67893903)
	2-564, gnl\|loxAfr1\|scaffold_101071 (1955-1460)
	2-564, gnl\|mm7\|chr8 (105612352-105612723)
	2-564, gnl\|monDom2\|scaffold_23 (4972132-4971683)
	2-564, gnl\|oryCun1\|scaffold_141494 (12078-12491)
	2-564, gnl\|panTro1\|chr18 (62233935-62234431)
	2-564, gnl\|rheMac2\|chr20 (67679145-67679647)
	2-564, gnl\|rn3\|chr19 (36872231-36872564)