Non-Coding RNA Search

Ss1.1-rdbla0119_f2.5

Sequence:


               
               TGGTCGATTCACTCTCCTCTCCCTCACCACTGCCTCTGAGTCGAAATAATCTGCTGCCAC
CTATTGGCACAGCTGAAGCGGAACACTTGAGCACCGTGGGGCCACAAAGGCAAATGAAAA
CTCATGGCGATTCCAGTCGAGCTCGAAGTGCAGTGGTGGATGAGCCTAACCATCAGCAGC
CCCAGGAGAGGCTCCTTTTACCTGACTTTTTCTCCAGGCCCAACACAACTCAATCATTTT
TGCCAGATACACGATATCATCGTTCATTTGCTGCTGAGTATCCTCAACAGGCCAGATCTG
GTAGGGGATCTGCTGGGACAGGTCCTCAGTTACACGGGTCTACAAAATCTCAAAACAGAA
GTGGACCAATCTCTAGAACCAGGCAGGGACCATAGGGCAGATGAAACGAAACTGCTTCAG
GCTGCAGGGAACACATGGGAAGGTTTCACAAATCAGTGTTGAGTCAACTAATGATACAGA
GCTTGTACACAAGAGACAACCTGAAAGCATCTTCATGAAGAGTTATTTTGGTACAACTGA
CTGAGAGCAGTATCAGCCAAAGATTACATAGGTACTGTTTCCATCTCCAATTACTTCTTT
CTGCATAAGTTAACCATTCCACCGGACACATAAGTTTGTACCCAAAGATGTAACAAATGA
ATAATTTCCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGTCGATTCACTCTCCTCTCCCTCACCACTGCCTCTGAGTCGAAATAATCTGCTGCCAC
CTATTGGCACAGCTGAAGCGGAACACTTGAGCACCGTGGGGCCACAAAGGCAAATGAAAA
CTCATGGCGATTCCAGTCGAGCTCGAAGTGCAGTGGTGGATGAGCCTAACCATCAGCAGC
CCCAGGAGAGGCTCCTTTTACCTGACTTTTTCTCCAGGCCCAACACAACTCAATCATTTT
TGCCAGATACACGATATCATCGTTCATTTGCTGCTGAGTATCCTCAACAGGCCAGATCTG
GTAGGGGATCTGCTGGGACAGGTCCTCAGTTACACGGGTCTACAAAATCTCAAAACAGAA
GTGGACCAATCTCTAGAACCAGGCAGGGACCATAGGGCAGATGAAACGAAACTGCTTCAG
GCTGCAGGGAACACATGGGAAGGTTTCACAAATCAGTGTTGAGTCAACTAATGATACAGA
GCTTGTACACAAGAGACAACCTGAAAGCATCTTCATGAAGAGTTATTTTGGTACAACTGA
CTGAGAGCAGTATCAGCCAAAGATTACATAGGTACTGTTTCCATCTCCAATTACTTCTTT
CTGCATAAGTTAACCATTCCACCGGACACATAAGTTTGTACCCAAAGATGTAACAAATGA
ATAATTTCCTCC

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               2-114, gnl|bosTau2|chr28 (22507709-22507821)
               

               
               2-114, gnl|Hg17|chr10 (74664590-74664702)
               

               
               2-114, gnl|Mm7|chr14 (18034966-18035078)
               


               
               116-251, gnl|bosTau2|chr28 (22508060-22508195)
               

               
               116-251, gnl|Hg17|chr10 (74664956-74665093)
               

               
               116-251, gnl|Mm7|chr14 (18035320-18035480)
               


               
               319-672, gnl|bosTau2|chr28 (22511181-22511536)
               

               
               319-672, gnl|Hg17|chr10 (74670707-74671060)
               

               
               319-672, gnl|Mm7|chr14 (18039471-18039831)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-114, gnl|bosTau2|chr28 (22507709-22507821)
               

               
               2-114, gnl|Hg17|chr10 (74664590-74664702)
               

               
               2-114, gnl|Mm7|chr14 (18034966-18035078)
               


               
               116-251, gnl|bosTau2|chr28 (22508060-22508195)
               

               
               116-251, gnl|Hg17|chr10 (74664956-74665093)
               

               
               116-251, gnl|Mm7|chr14 (18035320-18035480)
               


               
               319-672, gnl|bosTau2|chr28 (22511181-22511536)
               

               
               319-672, gnl|Hg17|chr10 (74670707-74671060)
               

               
               319-672, gnl|Mm7|chr14 (18039471-18039831)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               bla (0.124347)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               bla (0.124347)

	2-114, gnl\|bosTau2\|chr28 (22507709-22507821)
	2-114, gnl\|Hg17\|chr10 (74664590-74664702)
	2-114, gnl\|Mm7\|chr14 (18034966-18035078)

	116-251, gnl\|bosTau2\|chr28 (22508060-22508195)
	116-251, gnl\|Hg17\|chr10 (74664956-74665093)
	116-251, gnl\|Mm7\|chr14 (18035320-18035480)

	319-672, gnl\|bosTau2\|chr28 (22511181-22511536)
	319-672, gnl\|Hg17\|chr10 (74670707-74671060)
	319-672, gnl\|Mm7\|chr14 (18039471-18039831)

	cte (0.29274)
	liv (0.292569)
	gul (0.177588)
	eye (0.170503)
	cut (0.169924)
	nco (0.161734)
	bla (0.124347)