Non-Coding RNA Search

Ss1.1-rdbla0119_h14.5

Sequence:


               
               TACAACAATAGTTTAAGAAATTTAAAAAAAAAAAAAAAGGAAAAGAGGAAGACTGGACAA
AACAAAAAAAACAAAAAAGGGAGAAAGGAAAGAAACTGAAGAAAGAAGATAACAGACCAG
CAATCGCAGCACTTACAATCACTAATTCCCTTAAGGTTGAAACTGTAATGACATAAAAAG
GGTCGATGATATTTCACTGATGGTAGATCGCAGCCCCTGCAAAGTAGCCTTTGTTACATG
AAGTCCGCTGGGAAATAGATGTTCTGTCTCTATGACAATATATTTTAACTGACTTTCTAG
ATGCCTTAATATTTGCATGATAAGCTAGTTTTCTTGGTTTAGTATTCTTGTTGTTTACGC
ATGGAATCACTATTCCTGGTTATCTCACCAACGAAGGCGAGGAGGCGGCATCAGAGGTGC
TGGGGGACAGAGCCATGAGCCAGCCACTTTATAAGCACTCTGATTTCTAAAAGTTAAAAA
AATATATATATATGAAATCTCTGTAGCCTTTAGTTATCAGTACAGATTTATTCAATTTGG
GCCCTTAACCCAGCCTTTTCCAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACAACAATAGTTTAAGAAATTTAAAAAAAAAAAAAAAGGAAAAGAGGAAGACTGGACAA
AACAAAAAAAACAAAAAAGGGAGAAAGGAAAGAAACTGAAGAAAGAAGATAACAGACCAG
CAATCGCAGCACTTACAATCACTAATTCCCTTAAGGTTGAAACTGTAATGACATAAAAAG
GGTCGATGATATTTCACTGATGGTAGATCGCAGCCCCTGCAAAGTAGCCTTTGTTACATG
AAGTCCGCTGGGAAATAGATGTTCTGTCTCTATGACAATATATTTTAACTGACTTTCTAG
ATGCCTTAATATTTGCATGATAAGCTAGTTTTCTTGGTTTAGTATTCTTGTTGTTTACGC
ATGGAATCACTATTCCTGGTTATCTCACCAACGAAGGCGAGGAGGCGGCATCAGAGGTGC
TGGGGGACAGAGCCATGAGCCAGCCACTTTATAAGCACTCTGATTTCTAAAAGTTAAAAA
AATATATATATATGAAATCTCTGTAGCCTTTAGTTATCAGTACAGATTTATTCAATTTGG
GCCCTTAACCCAGCCTTTTCCAGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               355-497, - strand, RNAz p=0.84761

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               355-497, - strand, RNAz p=0.84761

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-564, gnl|bosTau2|chr6 (66614400-66613843)
               

               
               1-564, gnl|Hg17|chr9 (14078183-14077627)
               

               
               1-564, gnl|Mm7|chr4 (81700396-81699832)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-564, gnl|bosTau2|chr6 (66614400-66613843)
               

               
               1-564, gnl|Hg17|chr9 (14078183-14077627)
               

               
               1-564, gnl|Mm7|chr4 (81700396-81699832)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               pro (0.512033)
               

               
               mgp (0.461361)
               

               
               bla (0.373042)
               

               
               gul (0.355177)
               

               
               ssp (0.271039)
               

               
               hea (0.204499)
               

               
               cmu (0.186393)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               mgp (0.461361)
               

               
               bla (0.373042)
               

               
               gul (0.355177)
               

               
               ssp (0.271039)
               

               
               hea (0.204499)
               

               
               cmu (0.186393)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

	1-564, gnl\|bosTau2\|chr6 (66614400-66613843)
	1-564, gnl\|Hg17\|chr9 (14078183-14077627)
	1-564, gnl\|Mm7\|chr4 (81700396-81699832)

	pro (0.512033)
	mgp (0.461361)
	bla (0.373042)
	gul (0.355177)
	ssp (0.271039)
	hea (0.204499)
	cmu (0.186393)
	rec (0.17307)
	cut (0.169924)
	ski (0.146735)
	csk (0.140746)
	hlv (0.139256)
	che (0.136314)
	ecc (0.115035)
	spc (0.113366)