Non-Coding RNA Search

Ss1.1-rdbla0119_o4.5

Sequence:


               
               TAGGTCTTATTTTAGGAGCTGTTATATGCACATCTAAGTGAAATACAAAATTTGGGGTGG
TAATGGCTTTAGAGACATCTGTGTTTGAGTGTGCGAGGGTCTTTTTTAATTTTGCTTCAT
GAAGGTTCATCAGACCAGCTTCAACATCCGCTACTCTTTTTTCATAGGTAAGCTTTTCCC
ATCAGAGCTAGGCTTGTCACCAAATAGTGTTTTTGAAGGCTACGATGTTTCACAGTTTCT
TATTTTATATTTTTATTCTGCAAGCAGACTGCTAGGAGCAGGGTTGAGACTGCCATACTT
TGAATCAACTGAAAAAAAAAAGGCTTTGAACATTCTGATCAGTGGCTCTCTTTGCAAGAA
ACACTGTGTGCGGACAGTGTGACTCCGGGCCTCGCTCTGACGCAGCGATGTGTGTTATAC
TAGGAAATGGGGCTGAAAACAGCGCCTCATTTTTAATGAAGTGTGTGTGTGTGTGTGTGT
GTACCTCCTCATACTTAATTTATATGATAAAATAGGCGGGGAGCATCTGAACCCTAACTG
TCATATGTTCTGCTGTTGACCTGTGGCCACAATAAAATTTACTTATGAAATTTTAGAAGC
CCTTCATCCTGTTATGTTGCACTCGACTCACCATGAGGAGTGGAAGCAGAAGACTCCCAC
GGTAAGTGAGCCAGAGTCTCTCATATGCTGTCTTAGCAGCTCAACTGCCTCAGAGCAGTA
GTCTTTCTCAAGGCTACCGGCAGTCCTTAGAATTCTTCAGTTCAAGGCCAAAGTTCATTT
AAGTTCTTCCTCTTAAACACATTCAGGAAGCTGATACTTTTATTACTTTTGTCTGGATAA
CCAATCCTTTGGGAAGAATTTTAGCTAAGCAAGCTATCTGAGATGTGACTTGGCTAGGCA
AGTTGTGATGGGGGCTTCTCTTTAGGAATGAAAAAAAATCCTAATTTTGTATGGAGAAAT
TCCCTTTTTTGTAACCCATCCTTTTTATTGGTAAAAAATTGTAAATTAAAATGTGCAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGGTCTTATTTTAGGAGCTGTTATATGCACATCTAAGTGAAATACAAAATTTGGGGTGG
TAATGGCTTTAGAGACATCTGTGTTTGAGTGTGCGAGGGTCTTTTTTAATTTTGCTTCAT
GAAGGTTCATCAGACCAGCTTCAACATCCGCTACTCTTTTTTCATAGGTAAGCTTTTCCC
ATCAGAGCTAGGCTTGTCACCAAATAGTGTTTTTGAAGGCTACGATGTTTCACAGTTTCT
TATTTTATATTTTTATTCTGCAAGCAGACTGCTAGGAGCAGGGTTGAGACTGCCATACTT
TGAATCAACTGAAAAAAAAAAGGCTTTGAACATTCTGATCAGTGGCTCTCTTTGCAAGAA
ACACTGTGTGCGGACAGTGTGACTCCGGGCCTCGCTCTGACGCAGCGATGTGTGTTATAC
TAGGAAATGGGGCTGAAAACAGCGCCTCATTTTTAATGAAGTGTGTGTGTGTGTGTGTGT
GTACCTCCTCATACTTAATTTATATGATAAAATAGGCGGGGAGCATCTGAACCCTAACTG
TCATATGTTCTGCTGTTGACCTGTGGCCACAATAAAATTTACTTATGAAATTTTAGAAGC
CCTTCATCCTGTTATGTTGCACTCGACTCACCATGAGGAGTGGAAGCAGAAGACTCCCAC
GGTAAGTGAGCCAGAGTCTCTCATATGCTGTCTTAGCAGCTCAACTGCCTCAGAGCAGTA
GTCTTTCTCAAGGCTACCGGCAGTCCTTAGAATTCTTCAGTTCAAGGCCAAAGTTCATTT
AAGTTCTTCCTCTTAAACACATTCAGGAAGCTGATACTTTTATTACTTTTGTCTGGATAA
CCAATCCTTTGGGAAGAATTTTAGCTAAGCAAGCTATCTGAGATGTGACTTGGCTAGGCA
AGTTGTGATGGGGGCTTCTCTTTAGGAATGAAAAAAAATCCTAATTTTGTATGGAGAAAT
TCCCTTTTTTGTAACCCATCCTTTTTATTGGTAAAAAATTGTAAATTAAAATGTGCAACT

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-644, gnl|bosTau2|chr14 (8062039-8062669)
               

               
               1-644, gnl|Hg17|chr8 (124095789-124095158)
               

               
               1-644, gnl|Mm7|chr15 (57936085-57935488)
               


               
               648-1019, gnl|bosTau2|chr14 (8062701-8063056)
               

               
               648-1019, gnl|Hg17|chr8 (124095140-124094772)
               

               
               648-1019, gnl|Mm7|chr15 (57935474-57935115)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-644, gnl|bosTau2|chr14 (8062039-8062669)
               

               
               1-644, gnl|Hg17|chr8 (124095789-124095158)
               

               
               1-644, gnl|Mm7|chr15 (57936085-57935488)
               


               
               648-1019, gnl|bosTau2|chr14 (8062701-8063056)
               

               
               648-1019, gnl|Hg17|chr8 (124095140-124094772)
               

               
               648-1019, gnl|Mm7|chr15 (57935474-57935115)

Expressed library(ies): 18 entry(ies)

More info

Expressed library(ies): 18 entry(ies)

Help | Less info


               
               sto (0.359648)
               

               
               mcp (0.341297)
               

               
               fce (0.271592)
               

               
               ret (0.257467)
               

               
               eru (0.240096)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               fbs (0.175346)
               

               
               cli (0.152812)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.359648)
               

               
               mcp (0.341297)
               

               
               fce (0.271592)
               

               
               ret (0.257467)
               

               
               eru (0.240096)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               fbs (0.175346)
               

               
               cli (0.152812)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

	1-644, gnl\|bosTau2\|chr14 (8062039-8062669)
	1-644, gnl\|Hg17\|chr8 (124095789-124095158)
	1-644, gnl\|Mm7\|chr15 (57936085-57935488)

	648-1019, gnl\|bosTau2\|chr14 (8062701-8063056)
	648-1019, gnl\|Hg17\|chr8 (124095140-124094772)
	648-1019, gnl\|Mm7\|chr15 (57935474-57935115)

	sto (0.359648)
	mcp (0.341297)
	fce (0.271592)
	ret (0.257467)
	eru (0.240096)
	tes (0.207814)
	hea (0.204499)
	col (0.195008)
	fbs (0.175346)
	cli (0.152812)
	csk (0.140746)
	hlv (0.139256)
	che (0.136314)
	pla (0.133672)
	sug (0.127291)
	bla (0.124347)
	ebs (0.118301)
	jca (0.11396)