Non-Coding RNA Search

Ss1.1-rdbla0120_e4.5

Sequence:


               
               CAGGTCCTACACTTATGATAGCTACTATAGCAGGAGTCGGAGCCGAAGTAGAAGCCAGAG
GAGTGACAGTTATCACCGAGGCAGAAGCTACAATAGGCGGTCCAGGAGTTGTAGATCCTA
TGGCTCTGACAGTGAAAGTGACCGAAGTTACTCTCATCACCGGAGTCCCAGTGAAAGCAG
CAGATATAGTTAAAAGTGTCCCCTTTCTTTTTTTTTTTTTTTTTGATACAAATTATATCT
TAATTTGTAAATATCTGGTAACTTAAAAGTTTAAGAAACTTAATGGCAGTCTGTTGTTCT
GTTTCAATATTAGAGACAAATTTGAAAAATAGACACTTCTTAATTATTACTCATTCATTT
ATATATGCACAGGATTTAAAATACAGATATGTCTCCTAAAAATATTTGTATGCCACACTT
TACAGCCAACTATGGAAATGAATTTCATTTTCTTGAATCAAGAAATCATGAAATTTAATT
ATAATTCGCAATATTATTTTAGATAGACTATTTTCTCCATCTCATGTATTTCCTAGAAAA
CAGATTCTTTTTGCCCATTTTCCAGGTTTTGGCATGTATGCTGCTAAGCAAAGAACTGTG
AAGGAGAACTGATAAAGGTGGCCAGATATTTGTATACCAATTTCACAGAGTCTTATACAT
ATGTGCTCTTAAAAACAAACCACCCAGCACTGACACTAATGGTAGCCAGGAGTATAAGGC
AGTGGCTCTGGGGTTCTTAATTCATTGCTTTTTTGACTCAGAGGATCAGGAAAGTGGTCA
CCATACAGCCTGCTGTCTGTATTATTTCAGGCTGGCGGGTGAGGGTAAGAAGAATAAATC
AGCCTTAACTATAAATACCTGCACTGTCTCTAAGGCCCTGATGTTTTATGTGCTTTTTAA
TAAATACTATGAGAAGTTCAGTTGGTTAAAAAAATAATTCTATTCCAGTTTCTGCTTTGG
TGCTTGGTACCTTTTGGTGCCTCTTTAAGCATTATTCTTATATACTATACATTAAAATTC
CGTAAGAGAGAGAAATGATTTTTTTTTAATTCACTGGCACCAACATGGTTCCTTCTGAGC
TATATTCACTTCTAATATTTGGAGGGCTGGAGTTCCTGTCTTGGCGCAGCAGAAACAACT
CTGACTAGGAACCATGAGGTTGCAAGTTCAATTCCTAGCCCTGTTCAGTGGGTTAAGGAT
CTGGTGTTGCCGTGAGCTGTCGTGTAGGTCACAGACGTGACTCGGATCCTGTGTGGCTGT
GGCTGTGGCATAGGCCAGCAGCTGCAGCTCTGATTAGACCCCTAGTCTGGGAATCTCCAC
ATGCCTCGGGTACGGCCCTAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGTCCTACACTTATGATAGCTACTATAGCAGGAGTCGGAGCCGAAGTAGAAGCCAGAG
GAGTGACAGTTATCACCGAGGCAGAAGCTACAATAGGCGGTCCAGGAGTTGTAGATCCTA
TGGCTCTGACAGTGAAAGTGACCGAAGTTACTCTCATCACCGGAGTCCCAGTGAAAGCAG
CAGATATAGTTAAAAGTGTCCCCTTTCTTTTTTTTTTTTTTTTTGATACAAATTATATCT
TAATTTGTAAATATCTGGTAACTTAAAAGTTTAAGAAACTTAATGGCAGTCTGTTGTTCT
GTTTCAATATTAGAGACAAATTTGAAAAATAGACACTTCTTAATTATTACTCATTCATTT
ATATATGCACAGGATTTAAAATACAGATATGTCTCCTAAAAATATTTGTATGCCACACTT
TACAGCCAACTATGGAAATGAATTTCATTTTCTTGAATCAAGAAATCATGAAATTTAATT
ATAATTCGCAATATTATTTTAGATAGACTATTTTCTCCATCTCATGTATTTCCTAGAAAA
CAGATTCTTTTTGCCCATTTTCCAGGTTTTGGCATGTATGCTGCTAAGCAAAGAACTGTG
AAGGAGAACTGATAAAGGTGGCCAGATATTTGTATACCAATTTCACAGAGTCTTATACAT
ATGTGCTCTTAAAAACAAACCACCCAGCACTGACACTAATGGTAGCCAGGAGTATAAGGC
AGTGGCTCTGGGGTTCTTAATTCATTGCTTTTTTGACTCAGAGGATCAGGAAAGTGGTCA
CCATACAGCCTGCTGTCTGTATTATTTCAGGCTGGCGGGTGAGGGTAAGAAGAATAAATC
AGCCTTAACTATAAATACCTGCACTGTCTCTAAGGCCCTGATGTTTTATGTGCTTTTTAA
TAAATACTATGAGAAGTTCAGTTGGTTAAAAAAATAATTCTATTCCAGTTTCTGCTTTGG
TGCTTGGTACCTTTTGGTGCCTCTTTAAGCATTATTCTTATATACTATACATTAAAATTC
CGTAAGAGAGAGAAATGATTTTTTTTTAATTCACTGGCACCAACATGGTTCCTTCTGAGC
TATATTCACTTCTAATATTTGGAGGGCTGGAGTTCCTGTCTTGGCGCAGCAGAAACAACT
CTGACTAGGAACCATGAGGTTGCAAGTTCAATTCCTAGCCCTGTTCAGTGGGTTAAGGAT
CTGGTGTTGCCGTGAGCTGTCGTGTAGGTCACAGACGTGACTCGGATCCTGTGTGGCTGT
GGCTGTGGCATAGGCCAGCAGCTGCAGCTCTGATTAGACCCCTAGTCTGGGAATCTCCAC
ATGCCTCGGGTACGGCCCTAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61871670|ref|XP_611491.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61871670|ref|XP_611491.1|

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               103-221, - strand, RNAz p=0.859563
               

               
               379-571, - strand, RNAz p=0.854771
               

               
               731-841, - strand, RNAz p=0.992685
               

               
               954-1071, - strand, RNAz p=0.910133

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               103-221, - strand, RNAz p=0.859563
               

               
               379-571, - strand, RNAz p=0.854771
               

               
               731-841, - strand, RNAz p=0.992685
               

               
               954-1071, - strand, RNAz p=0.910133

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               103-1108, gnl|bosTau2|chr22 (14311835-14310876)
               

               
               103-1108, gnl|Hg17|chr3 (42662381-42663364)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               103-1108, gnl|bosTau2|chr22 (14311835-14310876)
               

               
               103-1108, gnl|Hg17|chr3 (42662381-42663364)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               ece (0.229305)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               cty (0.10408)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               cty (0.10408)

	103-221, - strand, RNAz p=0.859563
	379-571, - strand, RNAz p=0.854771
	731-841, - strand, RNAz p=0.992685
	954-1071, - strand, RNAz p=0.910133

	103-1108, gnl\|bosTau2\|chr22 (14311835-14310876)
	103-1108, gnl\|Hg17\|chr3 (42662381-42663364)

	ece (0.229305)
	ill (0.175593)
	sin (0.174948)
	mcp (0.170648)
	csk (0.140746)
	cst (0.140036)
	che (0.136314)
	ese (0.126502)
	bla (0.124347)
	med (0.116252)
	cty (0.10408)