Non-Coding RNA Search

Ss1.1-rdbla0120_p4.5

Sequence:


               
               TCCAAGGAATTAATCTCCAATGGTGAACTTTCAGATTTTTTAGATTAAACTTTGAGAGGT
AGGAAGCCTTCTTGATGTCCCTAAAATCTTAAATAGGCAGGTGCCTTGGAATAGGGCCAT
TCCTTTTTACCTGTTATTTTAATCTTTATACTGTGAGTAAATTTGGTTTCTTTGAACTCT
GGCATTTTGTTGTGGCAGTCTGTCAAACCTGCAGTATATCAAACCTGCAGCTTTTTGCAG
AGGATATTATCCAAATAGAATCTGGGCAATGCCGAACTAAAGAAAACTGAAATTACCTCT
CAGTATATTGTTTGCAAGTGCTGTGTGCTATTCACATGAAATTATGTGAAAATACTTTAT
AAGTAAGTGCCTCTATATTAGGATTCTTCAGTAGAATGTATTTTTAATTTTTGCCACAAG
GGGGAGAAGTTATTTTTATGGTAATACTTTTTTATTTGATAAAAAATAGAACTCACATTG
CTTCTCTCTACTGAACAGCACCTATGAACATGCCACTATCTTAATAGGAAGAGAGAGAGA
GAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTAAGATTCTTAAAGT
TGTGTGAGAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCAAGGAATTAATCTCCAATGGTGAACTTTCAGATTTTTTAGATTAAACTTTGAGAGGT
AGGAAGCCTTCTTGATGTCCCTAAAATCTTAAATAGGCAGGTGCCTTGGAATAGGGCCAT
TCCTTTTTACCTGTTATTTTAATCTTTATACTGTGAGTAAATTTGGTTTCTTTGAACTCT
GGCATTTTGTTGTGGCAGTCTGTCAAACCTGCAGTATATCAAACCTGCAGCTTTTTGCAG
AGGATATTATCCAAATAGAATCTGGGCAATGCCGAACTAAAGAAAACTGAAATTACCTCT
CAGTATATTGTTTGCAAGTGCTGTGTGCTATTCACATGAAATTATGTGAAAATACTTTAT
AAGTAAGTGCCTCTATATTAGGATTCTTCAGTAGAATGTATTTTTAATTTTTGCCACAAG
GGGGAGAAGTTATTTTTATGGTAATACTTTTTTATTTGATAAAAAATAGAACTCACATTG
CTTCTCTCTACTGAACAGCACCTATGAACATGCCACTATCTTAATAGGAAGAGAGAGAGA
GAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTAAGATTCTTAAAGT
TGTGTGAGAAGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-148, + strand, RNAz p=0.838831

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-148, + strand, RNAz p=0.838831

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-552, gnl|bosTau2|chr10 (46512637-46513192)
               

               
               1-552, gnl|Hg17|chr14 (56739906-56739241)
               

               
               1-552, gnl|Mm7|chr14 (44339727-44339148)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-552, gnl|bosTau2|chr10 (46512637-46513192)
               

               
               1-552, gnl|Hg17|chr14 (56739906-56739241)
               

               
               1-552, gnl|Mm7|chr14 (44339727-44339148)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               thg (0.253582)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               bla (0.124347)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.253582)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               bla (0.124347)

	1-552, gnl\|bosTau2\|chr10 (46512637-46513192)
	1-552, gnl\|Hg17\|chr14 (56739906-56739241)
	1-552, gnl\|Mm7\|chr14 (44339727-44339148)

	thg (0.253582)
	mga (0.160205)
	isp (0.150376)
	lin (0.145603)
	kid (0.129735)
	ova (0.129132)
	bla (0.124347)