Non-Coding RNA Search

Ss1.1-rdbla0122_k2.5

Sequence:


               
               TTGTGACCACAATGAAAAATTTAGACGATGATCTGATAAATGGCAAACTTCCCAAGCTCA
GGAACTCAAAAGAATGGTTGGAGCCACAGCCACTTTCTTTCATGGAGGTGTTAGCCAAAG
AAGATATTGATGCAGCTATTCAGTCAGTATTATACAGAGAAAATTATGTAATTAAGGAAC
TAGATAAGTATTTAAAACATCATGAATTCTTAAATGCAAGAAGAAAAGAAATATTACACA
AAAGATGGATTGACCATGTGGCAGATCCTCTCCAGAAGAAAATTATAGAAAAAGTTTGTT
CACATAAGAAGATTAAAAAAAGGAGACAAGAGGAATTGGATGGTTTTTTAAAATATGTAA
ATAAAAAGGGAAATGCATTTATAGAGCATTATGACCCAAAAGAATATGATCCTTTTTACA
TGAACAAAGAGGACCCGAATTTTCTGAAGGTTATCATCCCACCTTTTCGTGACCCTTTGA
AAAAGGCACAATATGATAAAGACGATGGGAAAAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGTGACCACAATGAAAAATTTAGACGATGATCTGATAAATGGCAAACTTCCCAAGCTCA
GGAACTCAAAAGAATGGTTGGAGCCACAGCCACTTTCTTTCATGGAGGTGTTAGCCAAAG
AAGATATTGATGCAGCTATTCAGTCAGTATTATACAGAGAAAATTATGTAATTAAGGAAC
TAGATAAGTATTTAAAACATCATGAATTCTTAAATGCAAGAAGAAAAGAAATATTACACA
AAAGATGGATTGACCATGTGGCAGATCCTCTCCAGAAGAAAATTATAGAAAAAGTTTGTT
CACATAAGAAGATTAAAAAAAGGAGACAAGAGGAATTGGATGGTTTTTTAAAATATGTAA
ATAAAAAGGGAAATGCATTTATAGAGCATTATGACCCAAAAGAATATGATCCTTTTTACA
TGAACAAAGAGGACCCGAATTTTCTGAAGGTTATCATCCCACCTTTTCGTGACCCTTTGA
AAAAGGCACAATATGATAAAGACGATGGGAAAAGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26336216|dbj|BAC31793.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26336216|dbj|BAC31793.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               175-293, - strand, RNAz p=0.608853

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               175-293, - strand, RNAz p=0.608853

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-109, gnl|bosTau2|chr11 (56305079-56304971)
               

               
               1-109, gnl|canFam2|chr17 (21561772-21562167)
               

               
               1-109, gnl|dasNov1|scaffold_18074 (2126-1758)
               

               
               1-109, gnl|echTel1|scaffold_279477 (45450-45068)
               

               
               1-109, gnl|hg17|chr2 (24258810-24259235)
               

               
               1-109, gnl|Hg17|chr2 (24258872-24258983)
               

               
               1-109, gnl|loxAfr1|scaffold_47622 (17753-18136)
               

               
               1-109, gnl|mm7|chr12 (4703940-4703564)
               

               
               1-109, gnl|Mm7|chr12 (4703881-4703769)
               

               
               1-109, gnl|oryCun1|scaffold_200093 (1925-2267)
               

               
               1-109, gnl|panTro1|chr12 (25136697-25137122)
               

               
               1-109, gnl|rheMac2|chr13 (24039627-24040051)
               

               
               1-109, gnl|rn3|chrUn (42783100-42783471)
               


               
               175-369, gnl|bosTau2|chr11 (56296251-56296057)
               

               
               175-369, gnl|Hg17|chr2 (24272428-24272622)
               

               
               175-369, gnl|Mm7|chr12 (4698571-4698377)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-109, gnl|bosTau2|chr11 (56305079-56304971)
               

               
               1-109, gnl|canFam2|chr17 (21561772-21562167)
               

               
               1-109, gnl|dasNov1|scaffold_18074 (2126-1758)
               

               
               1-109, gnl|echTel1|scaffold_279477 (45450-45068)
               

               
               1-109, gnl|hg17|chr2 (24258810-24259235)
               

               
               1-109, gnl|Hg17|chr2 (24258872-24258983)
               

               
               1-109, gnl|loxAfr1|scaffold_47622 (17753-18136)
               

               
               1-109, gnl|mm7|chr12 (4703940-4703564)
               

               
               1-109, gnl|Mm7|chr12 (4703881-4703769)
               

               
               1-109, gnl|oryCun1|scaffold_200093 (1925-2267)
               

               
               1-109, gnl|panTro1|chr12 (25136697-25137122)
               

               
               1-109, gnl|rheMac2|chr13 (24039627-24040051)
               

               
               1-109, gnl|rn3|chrUn (42783100-42783471)
               


               
               175-369, gnl|bosTau2|chr11 (56296251-56296057)
               

               
               175-369, gnl|Hg17|chr2 (24272428-24272622)
               

               
               175-369, gnl|Mm7|chr12 (4698571-4698377)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               tes (0.415628)
               

               
               bla (0.124347)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)
               

               
               bla (0.124347)

	1-109, gnl\|bosTau2\|chr11 (56305079-56304971)
	1-109, gnl\|canFam2\|chr17 (21561772-21562167)
	1-109, gnl\|dasNov1\|scaffold_18074 (2126-1758)
	1-109, gnl\|echTel1\|scaffold_279477 (45450-45068)
	1-109, gnl\|hg17\|chr2 (24258810-24259235)
	1-109, gnl\|Hg17\|chr2 (24258872-24258983)
	1-109, gnl\|loxAfr1\|scaffold_47622 (17753-18136)
	1-109, gnl\|mm7\|chr12 (4703940-4703564)
	1-109, gnl\|Mm7\|chr12 (4703881-4703769)
	1-109, gnl\|oryCun1\|scaffold_200093 (1925-2267)
	1-109, gnl\|panTro1\|chr12 (25136697-25137122)
	1-109, gnl\|rheMac2\|chr13 (24039627-24040051)
	1-109, gnl\|rn3\|chrUn (42783100-42783471)

	175-369, gnl\|bosTau2\|chr11 (56296251-56296057)
	175-369, gnl\|Hg17\|chr2 (24272428-24272622)
	175-369, gnl\|Mm7\|chr12 (4698571-4698377)