Non-Coding RNA Search

Ss1.1-rdbla0122_n11.5

Sequence:


               
               GGTTGTCCCGTCCCTCGCTCCTCACGGCTCGGAAGTGAGTGGTACGCTTCCCAAGATGGC
GCGCCTCTTGAGGGTGACTGGCGCGAGCGCTGCAGGGTTTTTTTCCAGACTTCAAACTCC
TGTTCCAACAGTAAGAACTTTTTCCATGTCGCTGACCTCGAATCAAGTGGCTAGTCCTGT
ATGGAACCTGGGGCGACTCAATCATATAGCAATAGCAGTGCAAGACTTGGAAAAGTCCAA
GGCATTTTATAAGAATGTTCTGGGGGCCCAAGTAGGTGAGATGGCCTCTATTCCTGAACA
TGGAGTGTCCGTTGTTTTTGTCAACCTGGGAAATACCAAGATGGAACTGCTTCATCCACT
GGGAAATGACAGTCCAATTGCAGGTTTTCTGCAGAAAAACAAAGCTGGAGGGATGCATCA
CATCTGCATTGAGGTGGATAATATAAATGCAGCTATGATGGATTTGAAAGAAAAGAAGAT
TCGCATTCTAAGTGAAGAGCCCAAAATAGGAGCACATGGAAAACCAGTGATTTTTCTCCA
TCCTAATGACTGCGGTGGAGTCCTTGTGGAACTGGAGCAAGCATGATTTCTATTCTCAGG
AAATTAATTGCCCTGAAAAAGCCTTATCAAAGTGGACTTCAGCATTGAGTCCTTCACTGC
TTCTATCACTTAAAGTTTCAAAATTAAAAAGTAAATTACAGAAAGAAATTTTTTAAATCA
TATGTACATACATACACATACAAAATATTTGCTAATTACTTTGAATTTTTTCCTGATTTG
GAGAAAACTTTGATTACTAAATACTTAGGGAATATTATTAAAATCATATTCATAGAAATA
AATTATTCCCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTGTCCCGTCCCTCGCTCCTCACGGCTCGGAAGTGAGTGGTACGCTTCCCAAGATGGC
GCGCCTCTTGAGGGTGACTGGCGCGAGCGCTGCAGGGTTTTTTTCCAGACTTCAAACTCC
TGTTCCAACAGTAAGAACTTTTTCCATGTCGCTGACCTCGAATCAAGTGGCTAGTCCTGT
ATGGAACCTGGGGCGACTCAATCATATAGCAATAGCAGTGCAAGACTTGGAAAAGTCCAA
GGCATTTTATAAGAATGTTCTGGGGGCCCAAGTAGGTGAGATGGCCTCTATTCCTGAACA
TGGAGTGTCCGTTGTTTTTGTCAACCTGGGAAATACCAAGATGGAACTGCTTCATCCACT
GGGAAATGACAGTCCAATTGCAGGTTTTCTGCAGAAAAACAAAGCTGGAGGGATGCATCA
CATCTGCATTGAGGTGGATAATATAAATGCAGCTATGATGGATTTGAAAGAAAAGAAGAT
TCGCATTCTAAGTGAAGAGCCCAAAATAGGAGCACATGGAAAACCAGTGATTTTTCTCCA
TCCTAATGACTGCGGTGGAGTCCTTGTGGAACTGGAGCAAGCATGATTTCTATTCTCAGG
AAATTAATTGCCCTGAAAAAGCCTTATCAAAGTGGACTTCAGCATTGAGTCCTTCACTGC
TTCTATCACTTAAAGTTTCAAAATTAAAAAGTAAATTACAGAAAGAAATTTTTTAAATCA
TATGTACATACATACACATACAAAATATTTGCTAATTACTTTGAATTTTTTCCTGATTTG
GAGAAAACTTTGATTACTAAATACTTAGGGAATATTATTAAAATCATATTCATAGAAATA
AATTATTCCCAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61822711|ref|XP_584912.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61822711|ref|XP_584912.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               433-849, gnl|bosTau2|chr21 (13639063-13638645)
               

               
               433-849, gnl|Hg17|chr2 (71248908-71248479)
               

               
               433-849, gnl|Mm7|chr7 (60164427-60164793)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               433-849, gnl|bosTau2|chr21 (13639063-13638645)
               

               
               433-849, gnl|Hg17|chr2 (71248908-71248479)
               

               
               433-849, gnl|Mm7|chr7 (60164427-60164793)

Expressed library(ies): 31 entry(ies)

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Expressed library(ies): 31 entry(ies)

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               mgp (0.461361)
               

               
               sug (0.381874)
               

               
               sag (0.36543)
               

               
               tbr (0.308356)
               

               
               bfe (0.299715)
               

               
               ldo (0.291008)
               

               
               ste (0.270416)
               

               
               lyg (0.266205)
               

               
               kid (0.259471)
               

               
               ese (0.253004)
               

               
               bla (0.248694)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               cje (0.165235)
               

               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 31 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.461361)
               

               
               sug (0.381874)
               

               
               sag (0.36543)
               

               
               tbr (0.308356)
               

               
               bfe (0.299715)
               

               
               ldo (0.291008)
               

               
               ste (0.270416)
               

               
               lyg (0.266205)
               

               
               kid (0.259471)
               

               
               ese (0.253004)
               

               
               bla (0.248694)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               cje (0.165235)
               

               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	433-849, gnl\|bosTau2\|chr21 (13639063-13638645)
	433-849, gnl\|Hg17\|chr2 (71248908-71248479)
	433-849, gnl\|Mm7\|chr7 (60164427-60164793)

	mgp (0.461361)
	sug (0.381874)
	sag (0.36543)
	tbr (0.308356)
	bfe (0.299715)
	ldo (0.291008)
	ste (0.270416)
	lyg (0.266205)
	kid (0.259471)
	ese (0.253004)
	bla (0.248694)
	jca (0.22792)
	nms (0.213858)
	fcc (0.197785)
	aor (0.195274)
	sto (0.179824)
	sin (0.174948)
	cje (0.165235)
	cli (0.152812)
	lun (0.150489)
	lin (0.145603)
	spl (0.143184)
	nca (0.136874)
	ova (0.129132)
	tra (0.123092)
	cly (0.120642)
	eru (0.120048)
	pgl (0.118483)
	spc (0.113366)
	jej (0.0989218)
	eje (0.0988338)