Non-Coding RNA Search

Ss1.1-rdbla0124_m14.5

Sequence:


               
               CTTTGTGACAATGTGCTGGCCCCCAATGTCACCAAGCAAGAATGCTGTTGCACCTCTGGT
GCTGGGTGGGGAGATAACTGTGAGATTTTCCCCTGCCCAGTCTTGGGGACTGCTGAATTC
ACTGAAATGTGTCCTAGAGGGAAAGGTTTTGTCCCCACTGGAGAATCCTCTTACGACGCC
GACAGCAACAACTATAAAGATGCAGATGAATGCTTACTTTTTGGACAAGAAATCTGCAAA
AATGGCTTCTGTTTGAACACTCAGCCTGGTTACGAATGCTACTGTAAGCAGGGGACATAC
TATGATCCTGTCAAATTGCAATGCTTTGATATAGACGAGTGTCAAGACCCCAGCAGTTGT
GTTGATGGCCAGTGCGTTAATACAGAAGGCTCTTATAACTGTTTCTGTACCCACCCAATG
GTCCTGGATGCTTCAGAAAAAAGATGTATCCGACCAAGCGAATCACATGAACAAATCGAA
GAAACCGACGTCTACCAAGATCTGTGCTGGGAACATCTGAGTGATGAGTATGTGTGTAGC
CGGCCTCTTGTTGGCAAGCAGACGACATACACTGAGTGCTGCTGTCTATATGGAGAGGCC
TGGGGTATGCAGTGCGCCCTCTGCCCCATGAAAGATTCAGATGACTATGCCCAGCTGTGC
AACATCCCTGTCACAGGACGCCGACGGCCATACGGACGGGATGCCTTGGTCGACTTCAGT
GAACAGTATACTCCCGAAGCCGATCCCTACTTCATTCAGGACCGTTTTTTAAATAGCTTT
GAGGAGTTGCAAGCTGAAGAATGTGGCATCCTTAATGGATGTGAAAATGGCCGCTGTGTC
AGGGTGCAGGAAGGTTACACCTGTGATTGCTTTGATGGGTATCACTTGGATATGGCCAAG
ATGACCTGTGTGGATGTCAACGAATGTGATGAGTTGAACAACCGGATGTCTCTCTGCAAG
AATGCCAAGTGCATCAACACCGAAGGTTCCTATAAGTGTGTGTGTCTGCCGGGCTTTGTA
CCTTCTGACAAGCCAAACTACTGCACTCCATTGAATACCGCCTTGAATTTAGAAAAAGAC
AGTGACCTGGAGTAAAAGCTACATAACCTACGCCCATATACTACTCTGCACTGTGTAAAA
GCAAAGAGAAATGTATTATACTTCAGACATTGCACCTAACCCAGAGTGTTGGAAATACGG
CAACATCAGGGAGTTGTTTATCCTCAGACGAGCAAGGATTCAGTGTGAGCCTGACTGGTG
TGACAGACCAAATGGACATTTCTCTGAAAAACCCGTATATATAGTCTGTGCATATGTAAA
ATTCAGTGGAAAAGAGGCAGAACAGTGCTGTTATTTTAAACAGAAGGTTGTATTATTATG
GTTTTTTTGTTTGTTTTGGTATTTTTTACTATTGCTTGATTAAATCTGGCCTTTAGTGAT
GGAAATATTTTATATAATTTTCATTGGTTTTGGTTGTGCAGTTCCTTGGCTACTGTTTCG
TTCTATTCAGATTTTGGTTTTTTTTTAAACTTTCAAGTGCAAAAAGTCTCTGGTAAAATA
TTGTTTAAACATATATATAAGTATTGTTACACAGGGTTATGCTATTCCTGGCTGGAACAT
TTTTTTAAAATCCAAATTGTCTGTCCTGTGGAACAGGCAGTGATTGTTTCAAAACTTTTA
TGCACATTTGGAGAAGAGTACTTTCTATTTACAATGTGTTGTCTGATTTTAATGTCCATT
CTTAGCCAAGCTGCTAGTAGGTGTTAATTGGATCCCTCTCCCCCATTGAAATGGAAGAAC
TAATGAGCTTACATTAGTATTGTTATGTGTAAAAGTAGGCCCAGCAAATTTTTTAAGAAA
CTTGATGATCCCAATATATTTACCAGTGTATGTTAAAGCAAAATAAATCACCATTTTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTGTGACAATGTGCTGGCCCCCAATGTCACCAAGCAAGAATGCTGTTGCACCTCTGGT
GCTGGGTGGGGAGATAACTGTGAGATTTTCCCCTGCCCAGTCTTGGGGACTGCTGAATTC
ACTGAAATGTGTCCTAGAGGGAAAGGTTTTGTCCCCACTGGAGAATCCTCTTACGACGCC
GACAGCAACAACTATAAAGATGCAGATGAATGCTTACTTTTTGGACAAGAAATCTGCAAA
AATGGCTTCTGTTTGAACACTCAGCCTGGTTACGAATGCTACTGTAAGCAGGGGACATAC
TATGATCCTGTCAAATTGCAATGCTTTGATATAGACGAGTGTCAAGACCCCAGCAGTTGT
GTTGATGGCCAGTGCGTTAATACAGAAGGCTCTTATAACTGTTTCTGTACCCACCCAATG
GTCCTGGATGCTTCAGAAAAAAGATGTATCCGACCAAGCGAATCACATGAACAAATCGAA
GAAACCGACGTCTACCAAGATCTGTGCTGGGAACATCTGAGTGATGAGTATGTGTGTAGC
CGGCCTCTTGTTGGCAAGCAGACGACATACACTGAGTGCTGCTGTCTATATGGAGAGGCC
TGGGGTATGCAGTGCGCCCTCTGCCCCATGAAAGATTCAGATGACTATGCCCAGCTGTGC
AACATCCCTGTCACAGGACGCCGACGGCCATACGGACGGGATGCCTTGGTCGACTTCAGT
GAACAGTATACTCCCGAAGCCGATCCCTACTTCATTCAGGACCGTTTTTTAAATAGCTTT
GAGGAGTTGCAAGCTGAAGAATGTGGCATCCTTAATGGATGTGAAAATGGCCGCTGTGTC
AGGGTGCAGGAAGGTTACACCTGTGATTGCTTTGATGGGTATCACTTGGATATGGCCAAG
ATGACCTGTGTGGATGTCAACGAATGTGATGAGTTGAACAACCGGATGTCTCTCTGCAAG
AATGCCAAGTGCATCAACACCGAAGGTTCCTATAAGTGTGTGTGTCTGCCGGGCTTTGTA
CCTTCTGACAAGCCAAACTACTGCACTCCATTGAATACCGCCTTGAATTTAGAAAAAGAC
AGTGACCTGGAGTAAAAGCTACATAACCTACGCCCATATACTACTCTGCACTGTGTAAAA
GCAAAGAGAAATGTATTATACTTCAGACATTGCACCTAACCCAGAGTGTTGGAAATACGG
CAACATCAGGGAGTTGTTTATCCTCAGACGAGCAAGGATTCAGTGTGAGCCTGACTGGTG
TGACAGACCAAATGGACATTTCTCTGAAAAACCCGTATATATAGTCTGTGCATATGTAAA
ATTCAGTGGAAAAGAGGCAGAACAGTGCTGTTATTTTAAACAGAAGGTTGTATTATTATG
GTTTTTTTGTTTGTTTTGGTATTTTTTACTATTGCTTGATTAAATCTGGCCTTTAGTGAT
GGAAATATTTTATATAATTTTCATTGGTTTTGGTTGTGCAGTTCCTTGGCTACTGTTTCG
TTCTATTCAGATTTTGGTTTTTTTTTAAACTTTCAAGTGCAAAAAGTCTCTGGTAAAATA
TTGTTTAAACATATATATAAGTATTGTTACACAGGGTTATGCTATTCCTGGCTGGAACAT
TTTTTTAAAATCCAAATTGTCTGTCCTGTGGAACAGGCAGTGATTGTTTCAAAACTTTTA
TGCACATTTGGAGAAGAGTACTTTCTATTTACAATGTGTTGTCTGATTTTAATGTCCATT
CTTAGCCAAGCTGCTAGTAGGTGTTAATTGGATCCCTCTCCCCCATTGAAATGGAAGAAC
TAATGAGCTTACATTAGTATTGTTATGTGTAAAAGTAGGCCCAGCAAATTTTTTAAGAAA
CTTGATGATCCCAATATATTTACCAGTGTATGTTAAAGCAAAATAAATCACCATTTTCTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1517-1920, gnl|bosTau2|chr11 (13159808-13160200)
               

               
               1517-1920, gnl|Hg17|chr2 (33535661-33536073)
               

               
               1517-1920, gnl|Mm7|chr17 (73681453-73681827)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1517-1920, gnl|bosTau2|chr11 (13159808-13160200)
               

               
               1517-1920, gnl|Hg17|chr2 (33535661-33536073)
               

               
               1517-1920, gnl|Mm7|chr17 (73681453-73681827)

Expressed library(ies): 22 entry(ies)

More info

Expressed library(ies): 22 entry(ies)

Help | Less info


               
               aor (0.976372)
               

               
               gul (0.710353)
               

               
               bla (0.621736)
               

               
               eru (0.60024)
               

               
               csk (0.562984)
               

               
               ski (0.440205)
               

               
               ova (0.387397)
               

               
               nmm (0.265604)
               

               
               sug (0.254582)
               

               
               tra (0.246184)
               

               
               cly (0.241284)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               cag (0.151194)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               cov (0.132153)
               

               
               ret (0.128733)
               

               
               pgl (0.118483)
               

               
               med (0.116252)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.976372)
               

               
               gul (0.710353)
               

               
               bla (0.621736)
               

               
               eru (0.60024)
               

               
               csk (0.562984)
               

               
               ski (0.440205)
               

               
               ova (0.387397)
               

               
               nmm (0.265604)
               

               
               sug (0.254582)
               

               
               tra (0.246184)
               

               
               cly (0.241284)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               cag (0.151194)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               cov (0.132153)
               

               
               ret (0.128733)
               

               
               pgl (0.118483)
               

               
               med (0.116252)

	1517-1920, gnl\|bosTau2\|chr11 (13159808-13160200)
	1517-1920, gnl\|Hg17\|chr2 (33535661-33536073)
	1517-1920, gnl\|Mm7\|chr17 (73681453-73681827)

	aor (0.976372)
	gul (0.710353)
	bla (0.621736)
	eru (0.60024)
	csk (0.562984)
	ski (0.440205)
	ova (0.387397)
	nmm (0.265604)
	sug (0.254582)
	tra (0.246184)
	cly (0.241284)
	hea (0.204499)
	col (0.195008)
	rec (0.17307)
	eye (0.170503)
	cag (0.151194)
	liv (0.146284)
	spl (0.143184)
	cov (0.132153)
	ret (0.128733)
	pgl (0.118483)
	med (0.116252)