Non-Coding RNA Search

Ss1.1-rdbla0124_p17.5

Sequence:


               
               GGTGGGGCTGAAATGGGTGGCCCCTGTCACACTGATGTGTTGGGTTTTGGTCCAACTTCT
TCACCTGAAAAAGCCAGCGGAGAAAACGTTTTTGTTTTGATTTTTCAAGCTACATACCAT
ATGTGTACGTGTAGCGGCTCTGACTTTGAAATAACACTTGTCAAGGGGCTGATGCTCTTT
CAGAGCGGAGAGTCAAGTGTAGGCCTGTTACACTTGGTTAATATCCTTTTCATAACAATC
TCCGTGGAGGTCAAGTCACACAAAAACATGTGAAACTATTTCGATAGGGCTCCCTACCCA
CAAAGAAGTTTATGGTTATTTGAGAGAGGTGGCCTCGTTGTTATGTATTATTGTCTTTAA
GGGAAAAAGAAGCTATACGATTTGCTGACGGCCAAAGCATCATTCAGAAAAATGAAACAA
CTTATGTTTAGAAGAGAGACGTTGGTTTGTGTTTTGACCTGTTCAATGACTATCTTCCGG
AAAAGAATGGACAGTTCCTCAAAAAGTATATACATTTGGCTAATTAGAAATTTCTTGGGG
AAAAAATCTCACGGTCACTCACTTTCAGCTAGCATCAGGTATTTTGGAAAAGTGTGTCTG
GATATTAACTCATGTTTCAACTGAATGTATGATATTTTGTTAGAATGGAAAAGTACTATC
TTGTTAATTTAAATGTTTTAAATATAGTTGTATATTTTTCCTACTCTTAGTCACATGTAA
TTGATATATTGGTGTCTTACATGAAGCTAATGAGAAAGTGTGCAAGATGTTTTCAGGTTC
ACCAGTGACCACCAAGGCTATTGCCACTGTGGGCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGGGGCTGAAATGGGTGGCCCCTGTCACACTGATGTGTTGGGTTTTGGTCCAACTTCT
TCACCTGAAAAAGCCAGCGGAGAAAACGTTTTTGTTTTGATTTTTCAAGCTACATACCAT
ATGTGTACGTGTAGCGGCTCTGACTTTGAAATAACACTTGTCAAGGGGCTGATGCTCTTT
CAGAGCGGAGAGTCAAGTGTAGGCCTGTTACACTTGGTTAATATCCTTTTCATAACAATC
TCCGTGGAGGTCAAGTCACACAAAAACATGTGAAACTATTTCGATAGGGCTCCCTACCCA
CAAAGAAGTTTATGGTTATTTGAGAGAGGTGGCCTCGTTGTTATGTATTATTGTCTTTAA
GGGAAAAAGAAGCTATACGATTTGCTGACGGCCAAAGCATCATTCAGAAAAATGAAACAA
CTTATGTTTAGAAGAGAGACGTTGGTTTGTGTTTTGACCTGTTCAATGACTATCTTCCGG
AAAAGAATGGACAGTTCCTCAAAAAGTATATACATTTGGCTAATTAGAAATTTCTTGGGG
AAAAAATCTCACGGTCACTCACTTTCAGCTAGCATCAGGTATTTTGGAAAAGTGTGTCTG
GATATTAACTCATGTTTCAACTGAATGTATGATATTTTGTTAGAATGGAAAAGTACTATC
TTGTTAATTTAAATGTTTTAAATATAGTTGTATATTTTTCCTACTCTTAGTCACATGTAA
TTGATATATTGGTGTCTTACATGAAGCTAATGAGAAAGTGTGCAAGATGTTTTCAGGTTC
ACCAGTGACCACCAAGGCTATTGCCACTGTGGGCAC

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-815, gnl|bosTau2|chr9 (54724515-54725313)
               

               
               1-815, gnl|Hg17|chr6 (154819253-154818432)
               

               
               1-815, gnl|Mm7|chr10 (3226596-3227445)
               


               
               393-628, gnl|bosTau2|chr10 (10860429-10860666)
               

               
               393-628, gnl|Hg17|chr6 (154818882-154818627)
               

               
               393-628, gnl|Mm7|chr10 (3227006-3227245)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-815, gnl|bosTau2|chr9 (54724515-54725313)
               

               
               1-815, gnl|Hg17|chr6 (154819253-154818432)
               

               
               1-815, gnl|Mm7|chr10 (3226596-3227445)
               


               
               393-628, gnl|bosTau2|chr10 (10860429-10860666)
               

               
               393-628, gnl|Hg17|chr6 (154818882-154818627)
               

               
               393-628, gnl|Mm7|chr10 (3227006-3227245)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               nje (0.33184)
               

               
               ova (0.258264)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               hlv (0.139256)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               nbm (0.0993246)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.33184)
               

               
               ova (0.258264)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               hlv (0.139256)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               nbm (0.0993246)

	1-815, gnl\|bosTau2\|chr9 (54724515-54725313)
	1-815, gnl\|Hg17\|chr6 (154819253-154818432)
	1-815, gnl\|Mm7\|chr10 (3226596-3227445)

	393-628, gnl\|bosTau2\|chr10 (10860429-10860666)
	393-628, gnl\|Hg17\|chr6 (154818882-154818627)
	393-628, gnl\|Mm7\|chr10 (3227006-3227245)

	nje (0.33184)
	ova (0.258264)
	isp (0.150376)
	ski (0.146735)
	hlv (0.139256)
	bla (0.124347)
	tra (0.123092)
	nbm (0.0993246)