Ss1.1-rdbla0125_b3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCAGAGAAAGTGGTTGTGATCACAAAGCACAATGATGATGAACAGTATGCCTGGGAGTC TTCTGCTGGGGGCTCCTTCACAGTTCGTGCTGACCTTGGTACCTCGGCCAATGGGCCCCA CACGCACATGCACACGCACTTCAAGTTCTTTCCAAAAATCGCAAAAACGAAGTTCCAGGA GAAGCTCCTGGGATCCCTTTCATTGTGCCCGAGAAACAGCAGAGCTAATGGTGAGACCAG CAGGGTATATTCTCAGGCCTCTGCAACACACAAATGCCAGGGCACAGGTGACCGTGCAGT TCCCTTTTGTACGGGTTGTCACTCTTTTGTGAATTCAAGTCAGGCTGGATTAGTACATAG AGAGAGGTTTCTCAGGTTCAGTACCTGCCTTTTACCTTCAGCCAATAGTGGCAAGAAGCC ACTGGTGAGGTGAGAAGTAGTTTCCAGGGACTCTTGTCAGTGGTTCTGCGGTGGATTCTG AGAACTATGCTCATGGCTTAGAGAGCAATGCTTTTATTTAAATATTCAGAGAGCATCTCT TCCCAAAGAACCACAGGCAGTAATCAAAACTGTATGCGTTTACCCCCCAAGAATTCTATC TTTATTTGCTTTAATGAACAATCAGCTCAGCATAAATCAGCTTGTCACCTGAGAAATTAT CAACGTTGATTTGAACATTGTTCACATTTATAGTGAAGAAATCAGAACTTCATGTACTTT CATTCCGCTTAATTATATGCAACTTTAGAAGGAAACTGTTCCCCTGGAAATCTTACAAAA ATCTAGAAATTGATTGTAAACATTCATTTTGAGCTTGGAGAATAAGCTTGTCCATCTGGC TTCCCTGTACATGTAATGAATAAGGTGCCTCTAAAGGAGACACATGTAGAAATGACTTCA TAATGATTCTCAGTGTTAACAAATATGTAGGTTATTAAAGCAGAGCCTTTAAAGAAGGAA CGTTTCTAGAACCATCCAAATGAAACTGTGCCTGTCAGAGGGTTCATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCAGAGAAAGTGGTTGTGATCACAAAGCACAATGATGATGAACAGTATGCCTGGGAGTC TTCTGCTGGGGGCTCCTTCACAGTTCGTGCTGACCTTGGTACCTCGGCCAATGGGCCCCA CACGCACATGCACACGCACTTCAAGTTCTTTCCAAAAATCGCAAAAACGAAGTTCCAGGA GAAGCTCCTGGGATCCCTTTCATTGTGCCCGAGAAACAGCAGAGCTAATGGTGAGACCAG CAGGGTATATTCTCAGGCCTCTGCAACACACAAATGCCAGGGCACAGGTGACCGTGCAGT TCCCTTTTGTACGGGTTGTCACTCTTTTGTGAATTCAAGTCAGGCTGGATTAGTACATAG AGAGAGGTTTCTCAGGTTCAGTACCTGCCTTTTACCTTCAGCCAATAGTGGCAAGAAGCC ACTGGTGAGGTGAGAAGTAGTTTCCAGGGACTCTTGTCAGTGGTTCTGCGGTGGATTCTG AGAACTATGCTCATGGCTTAGAGAGCAATGCTTTTATTTAAATATTCAGAGAGCATCTCT TCCCAAAGAACCACAGGCAGTAATCAAAACTGTATGCGTTTACCCCCCAAGAATTCTATC TTTATTTGCTTTAATGAACAATCAGCTCAGCATAAATCAGCTTGTCACCTGAGAAATTAT CAACGTTGATTTGAACATTGTTCACATTTATAGTGAAGAAATCAGAACTTCATGTACTTT CATTCCGCTTAATTATATGCAACTTTAGAAGGAAACTGTTCCCCTGGAAATCTTACAAAA ATCTAGAAATTGATTGTAAACATTCATTTTGAGCTTGGAGAATAAGCTTGTCCATCTGGC TTCCCTGTACATGTAATGAATAAGGTGCCTCTAAAGGAGACACATGTAGAAATGACTTCA TAATGATTCTCAGTGTTAACAAATATGTAGGTTATTAAAGCAGAGCCTTTAAAGAAGGAA CGTTTCTAGAACCATCCAAATGAAACTGTGCCTGTCAGAGGGTTCATG |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-108, gnl|bosTau2|chr23 (17554938-17554831) | |
| 1-108, gnl|canFam2|chr12 (15664019-15664192) | |
| 1-108, gnl|danRer3|chr1 (30664498-30664288) | |
| 1-108, gnl|dasNov1|scaffold_31442 (1314-1486) | |
| 1-108, gnl|echTel1|scaffold_275962 (14758-14919) | |
| 1-108, gnl|fr1|chrUn (228401931-228401763) | |
| 1-108, gnl|galGal2|chr3 (26597984-26597816) | |
| 1-108, gnl|hg17|chr6 (44325384-44325560) | |
| 1-108, gnl|Hg17|chr6 (44325452-44325559) | |
| 1-108, gnl|loxAfr1|scaffold_65546 (4169-4315) | |
| 1-108, gnl|mm7|chr17 (43700586-43700413) | |
| 1-108, gnl|Mm7|chr17 (43700519-43700412) | |
| 1-108, gnl|monDom2|scaffold_96 (721030-721192) | |
| 1-108, gnl|oryCun1|scaffold_108182 (13512-13674) | |
| 1-108, gnl|panTro1|chr5_random (28192117-28191944) | |
| 1-108, gnl|rheMac2|chr4 (44169693-44169866) | |
| 1-108, gnl|rn3|chr9 (11032825-11032998) | |
| 1-108, gnl|tetNig1|chr14 (2284746-2284578) | |
| 1-108, gnl|xenTro1|scaffold_1101 (274978-274802) | |
| 119-1008, gnl|bosTau2|chr9 (59837931-59837052) | |
| 119-1008, gnl|Hg17|chr6 (161741443-161740520) | |
| 119-1008, gnl|Mm7|chr17 (10779197-10779952) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-108, gnl|bosTau2|chr23 (17554938-17554831) | |
| 1-108, gnl|canFam2|chr12 (15664019-15664192) | |
| 1-108, gnl|danRer3|chr1 (30664498-30664288) | |
| 1-108, gnl|dasNov1|scaffold_31442 (1314-1486) | |
| 1-108, gnl|echTel1|scaffold_275962 (14758-14919) | |
| 1-108, gnl|fr1|chrUn (228401931-228401763) | |
| 1-108, gnl|galGal2|chr3 (26597984-26597816) | |
| 1-108, gnl|hg17|chr6 (44325384-44325560) | |
| 1-108, gnl|Hg17|chr6 (44325452-44325559) | |
| 1-108, gnl|loxAfr1|scaffold_65546 (4169-4315) | |
| 1-108, gnl|mm7|chr17 (43700586-43700413) | |
| 1-108, gnl|Mm7|chr17 (43700519-43700412) | |
| 1-108, gnl|monDom2|scaffold_96 (721030-721192) | |
| 1-108, gnl|oryCun1|scaffold_108182 (13512-13674) | |
| 1-108, gnl|panTro1|chr5_random (28192117-28191944) | |
| 1-108, gnl|rheMac2|chr4 (44169693-44169866) | |
| 1-108, gnl|rn3|chr9 (11032825-11032998) | |
| 1-108, gnl|tetNig1|chr14 (2284746-2284578) | |
| 1-108, gnl|xenTro1|scaffold_1101 (274978-274802) | |
| 119-1008, gnl|bosTau2|chr9 (59837931-59837052) | |
| 119-1008, gnl|Hg17|chr6 (161741443-161740520) | |
| 119-1008, gnl|Mm7|chr17 (10779197-10779952) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ski (0.146735) | |
| bla (0.124347) |