Non-Coding RNA Search

Ss1.1-rdbla0125_c11.5

Sequence:


               
               CCCTCTTCTGATGAACAGCCAATCAAAGCTTTTCGGTTCTGCTTCGCTGCCATCTCTTAG
TCCCACCCCCACCATCAACATCTTAACGTGGTCTGGCTGAGGAGGGAACGTCAGCCAATG
ACAGCTGCTCAACGCTACAAACCACCAGGCCCAGTTGTTAAACGGAGCCCTCCCGAGGCT
ATATATCTCTGTCTTTTTAGCACGCAACGGGCAAAGTGCCCATCCTGTTCACCAAGGCGG
AGCTCCAGCCCGCGGCCAGTGAGAGCAATTTAGCCCAGTTCTCTGGCAAACGACCAACGA
CAGCTGCTGGGCACTATCAACCTAGGGCAGCCAGTTGTCCCTGCATAGAGGTCACCAATC
AGAATGTGTAAAGGAGACCCGATCTTTCCATTAGTTGCCTTTACTTATAAGGCAGGCCAT
TCAGACAACTGCCTATCAGCTTGTCCAGGCTAGAGGAGTTGAGAGCTTTGTGCCAGGTGG
AAAGCTGTGGGCCAGGAGGAGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTCTTCTGATGAACAGCCAATCAAAGCTTTTCGGTTCTGCTTCGCTGCCATCTCTTAG
TCCCACCCCCACCATCAACATCTTAACGTGGTCTGGCTGAGGAGGGAACGTCAGCCAATG
ACAGCTGCTCAACGCTACAAACCACCAGGCCCAGTTGTTAAACGGAGCCCTCCCGAGGCT
ATATATCTCTGTCTTTTTAGCACGCAACGGGCAAAGTGCCCATCCTGTTCACCAAGGCGG
AGCTCCAGCCCGCGGCCAGTGAGAGCAATTTAGCCCAGTTCTCTGGCAAACGACCAACGA
CAGCTGCTGGGCACTATCAACCTAGGGCAGCCAGTTGTCCCTGCATAGAGGTCACCAATC
AGAATGTGTAAAGGAGACCCGATCTTTCCATTAGTTGCCTTTACTTATAAGGCAGGCCAT
TCAGACAACTGCCTATCAGCTTGTCCAGGCTAGAGGAGTTGAGAGCTTTGTGCCAGGTGG
AAAGCTGTGGGCCAGGAGGAGCCA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               189-305, - strand, RNAz p=0.978198
               

               
               386-504, + strand, RNAz p=0.805736

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               189-305, - strand, RNAz p=0.978198
               

               
               386-504, + strand, RNAz p=0.805736

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_018273, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_018273, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-504, gnl|bosTau2|chr18 (50449847-50450352)
               

               
               1-504, gnl|Hg17|chr19 (53528098-53527616)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-504, gnl|bosTau2|chr18 (50449847-50450352)
               

               
               1-504, gnl|Hg17|chr19 (53528098-53527616)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               bla (0.124347)
               

               
               cly (0.120642)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	189-305, - strand, RNAz p=0.978198
	386-504, + strand, RNAz p=0.805736

	1-504, gnl\|bosTau2\|chr18 (50449847-50450352)
	1-504, gnl\|Hg17\|chr19 (53528098-53527616)