Ss1.1-rdbla0125_e20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGAGCCCACGCCGCGCACCCAGCAGTAGGCGCGCCATGGCGATGGGCGGCGGTGGCGGCG GCAGCGGTGTTCCTGAGGCGGAGGACTCGGTGCTGTTCCGGCGCGGTGCAGGCCAGAGTG ATGATTCGGACATTTGGGATGATACAGCGTTGATAAAAGCTTATGATAAAGCTGTGGCTT CATTTAAGCATGCTCTAAAGAATGGTGACATTTCCGAAGCTTCAGATAAACCAAAAGCCA CACCTAAAAGAAAACCTCCTAAGAAGAATAAAAGCCAAAAAAAGAATACCACAGCCTCCT TGAAGCAGTGGAAGGTTGGTGACAGATGTTCTGCCATTTGGTCAGAAGATGGCTGCATTT ACCCAGCTACCATTGCTTCGATTGATTTTAAGAGAGAAACCTGTATTGTGGTTTACACTG GATATGGAAATAGAGAAGAGCAAAATCTGTCTGATTTACTTTCCCCCACCTCTGAAGTAG CTAATAATATAGAAGAGAATGCTCAGGAGAATGAAAATGAAAGTCAAATTTCCACAGATG AAAGTGAGAGCTCCTCCAGATCTCCTGGAAATAAGCCAAATAACATCAAGTCAAAAGCTG CTCCATGGAACTCTTTTCTCCCTCCACCACCCCCTATGCCAGGAGCAGGTCTTGGACCAA GAAAGCCAGGTCTAAAATTCAACGGCCCACCACCACCACCACCGCCGCCGCCGCACTTCC TGTCATGCTGGCTGCCTCCGTTTCCTTCTGGACCACCAATAATTCCCCCCCCACCTCCTA TATGTCCAGATTCTCTGGATGATGCTGATGCTTTGGGAAGTATGTTAATCTCTTGGTACA TGAGTGGCTATCATACTGGTTACTATATGGGTTTCAAACAAAATCAAAAAGAAGGAAGAT GCTCACATTTCAATTAAGGAGTAAATCATACGGTGTTCTGTAATAGGTGCAGTTCTCTCC CAAGGAGAATGGTATTTTGATGTGCCCTGGTCGATATGAACAAAAGTTTCATCATTTTCT TCATGAACACTCAGATGGGTGCATGTCATCTTCATTTGCCCCTCGATGCATGTGACTCTT GCTTAAATAACCAGTTAAATGTTTTAAGGGAATAATCAGTTTGAATAACTGAACAGTGGA AATATGAGTAATTAAAAGAAACTCAAGGTCACATACAGTACAGAAAGTGAATCTGTCAAA ATTGAGGCTTAGCACATTTGTATATTGTAACTTTCTTAGTCTGTTAAGCTTTTATTAATG CCTTTAAAATAAATGATAATTTTTTTAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGAGCCCACGCCGCGCACCCAGCAGTAGGCGCGCCATGGCGATGGGCGGCGGTGGCGGCG GCAGCGGTGTTCCTGAGGCGGAGGACTCGGTGCTGTTCCGGCGCGGTGCAGGCCAGAGTG ATGATTCGGACATTTGGGATGATACAGCGTTGATAAAAGCTTATGATAAAGCTGTGGCTT CATTTAAGCATGCTCTAAAGAATGGTGACATTTCCGAAGCTTCAGATAAACCAAAAGCCA CACCTAAAAGAAAACCTCCTAAGAAGAATAAAAGCCAAAAAAAGAATACCACAGCCTCCT TGAAGCAGTGGAAGGTTGGTGACAGATGTTCTGCCATTTGGTCAGAAGATGGCTGCATTT ACCCAGCTACCATTGCTTCGATTGATTTTAAGAGAGAAACCTGTATTGTGGTTTACACTG GATATGGAAATAGAGAAGAGCAAAATCTGTCTGATTTACTTTCCCCCACCTCTGAAGTAG CTAATAATATAGAAGAGAATGCTCAGGAGAATGAAAATGAAAGTCAAATTTCCACAGATG AAAGTGAGAGCTCCTCCAGATCTCCTGGAAATAAGCCAAATAACATCAAGTCAAAAGCTG CTCCATGGAACTCTTTTCTCCCTCCACCACCCCCTATGCCAGGAGCAGGTCTTGGACCAA GAAAGCCAGGTCTAAAATTCAACGGCCCACCACCACCACCACCGCCGCCGCCGCACTTCC TGTCATGCTGGCTGCCTCCGTTTCCTTCTGGACCACCAATAATTCCCCCCCCACCTCCTA TATGTCCAGATTCTCTGGATGATGCTGATGCTTTGGGAAGTATGTTAATCTCTTGGTACA TGAGTGGCTATCATACTGGTTACTATATGGGTTTCAAACAAAATCAAAAAGAAGGAAGAT GCTCACATTTCAATTAAGGAGTAAATCATACGGTGTTCTGTAATAGGTGCAGTTCTCTCC CAAGGAGAATGGTATTTTGATGTGCCCTGGTCGATATGAACAAAAGTTTCATCATTTTCT TCATGAACACTCAGATGGGTGCATGTCATCTTCATTTGCCCCTCGATGCATGTGACTCTT GCTTAAATAACCAGTTAAATGTTTTAAGGGAATAATCAGTTTGAATAACTGAACAGTGGA AATATGAGTAATTAAAAGAAACTCAAGGTCACATACAGTACAGAAAGTGAATCTGTCAAA ATTGAGGCTTAGCACATTTGTATATTGTAACTTTCTTAGTCTGTTAAGCTTTTATTAATG CCTTTAAAATAAATGATAATTTTTTTAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1062-1181, - strand, RNAz p=0.951784 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1062-1181, - strand, RNAz p=0.951784 |
| Aligned organism(s): 75 entry(ies) | More info |
| Aligned organism(s): 75 entry(ies) | Help | Less info |
| 306-532, gnl|bosTau2|chr20 (4648647-4648422) | |
| 306-532, gnl|canFam2|chr2 (57494213-57494015) | |
| 306-532, gnl|canFam2|chr2 (57494224-57494027) | |
| 306-532, gnl|danRer3|chr5 (48001843-48001655) | |
| 306-532, gnl|danRer3|chr5 (48001852-48001667) | |
| 306-532, gnl|dasNov1|scaffold_55638 (3963-3766) | |
| 306-532, gnl|dasNov1|scaffold_7519 (76748-76943) | |
| 306-532, gnl|echTel1|scaffold_232729 (7410-7608) | |
| 306-532, gnl|echTel1|scaffold_287386 (41162-40965) | |
| 306-532, gnl|fr1|chrUn (174872503-174872696) | |
| 306-532, gnl|fr1|chrUn (174872495-174872691) | |
| 306-532, gnl|hg17|chr5 (69398505-69398702) | |
| 306-532, gnl|Hg17|chr5 (70273938-70274172) | |
| 306-532, gnl|hg17|chr9 (20321714-20321910) | |
| 306-532, gnl|loxAfr1|scaffold_54076 (3789-3951) | |
| 306-532, gnl|loxAfr1|scaffold_54076 (3800-3939) | |
| 306-532, gnl|mm7|chr13 (97199186-97199386) | |
| 306-532, gnl|mm7|chr13 (97199177-97199374) | |
| 306-532, gnl|Mm7|chr13 (97199186-97199414) | |
| 306-532, gnl|monDom2|scaffold_60 (4116655-4116464) | |
| 306-532, gnl|oryCun1|scaffold_149581 (26220-26420) | |
| 306-532, gnl|oryCun1|scaffold_149581 (26211-26408) | |
| 306-532, gnl|panTro1|chr11 (20591472-20591667) | |
| 306-532, gnl|panTro1|chr4 (46774644-46774844) | |
| 306-532, gnl|rheMac2|chr15 (56670838-56670646) | |
| 306-532, gnl|rheMac2|chr6 (67562886-67562689) | |
| 306-532, gnl|rn3|chr2 (31070991-31071191) | |
| 306-532, gnl|rn3|chr2 (31070982-31071179) | |
| 306-532, gnl|tetNig1|chr12 (1100572-1100749) | |
| 306-532, gnl|tetNig1|chr12 (1100560-1100743) | |
| 306-532, gnl|xenTro1|scaffold_120 (420640-420443) | |
| 306-532, gnl|xenTro1|scaffold_120 (420652-420455) | |
| 759-870, gnl|bosTau2|chr20 (4645869-4645758) | |
| 759-870, gnl|canFam2|chr2 (57489476-57489591) | |
| 759-870, gnl|canFam2|chr2 (57489592-57489489) | |
| 759-870, gnl|canFam2|chr2 (57489600-57489476) | |
| 759-870, gnl|danRer3|chr5 (47996878-47996793) | |
| 759-870, gnl|danRer3|chr5 (47996902-47996786) | |
| 759-870, gnl|dasNov1|scaffold_55638 (1133-1009) | |
| 759-870, gnl|dasNov1|scaffold_7519 (77153-77251) | |
| 759-870, gnl|dasNov1|scaffold_84833 (5557-5465) | |
| 759-870, gnl|echTel1|scaffold_232729 (7956-7849) | |
| 759-870, gnl|echTel1|scaffold_232729 (7847-7951) | |
| 759-870, gnl|echTel1|scaffold_232729 (7846-7956) | |
| 759-870, gnl|fr1|chrUn (174873502-174873603) | |
| 759-870, gnl|fr1|chrUn (174873498-174873614) | |
| 759-870, gnl|hg17|chr4 (184324897-184325012) | |
| 759-870, gnl|hg17|chr5 (69402220-69402344) | |
| 759-870, gnl|Hg17|chr5 (70277649-70277760) | |
| 759-870, gnl|hg17|chr9 (20322119-20322224) | |
| 759-870, gnl|loxAfr1|scaffold_24093 (42099-41984) | |
| 759-870, gnl|loxAfr1|scaffold_24093 (41982-42083) | |
| 759-870, gnl|loxAfr1|scaffold_24093 (41975-42099) | |
| 759-870, gnl|mm7|chr13 (97203854-97203746) | |
| 759-870, gnl|mm7|chr13 (97203744-97203848) | |
| 759-870, gnl|mm7|chr13 (97203737-97203861) | |
| 759-870, gnl|Mm7|chr13 (97203741-97203852) | |
| 759-870, gnl|monDom2|scaffold_60 (4111837-4111713) | |
| 759-870, gnl|oryCun1|scaffold_149581 (30273-30161) | |
| 759-870, gnl|oryCun1|scaffold_149581 (30159-30263) | |
| 759-870, gnl|oryCun1|scaffold_149581 (30152-30274) | |
| 759-870, gnl|panTro1|chr11 (20591876-20591981) | |
| 759-870, gnl|panTro1|chr3 (202545121-202545236) | |
| 759-870, gnl|panTro1|chr4 (46778385-46778509) | |
| 759-870, gnl|rheMac2|chr15 (56670493-56670389) | |
| 759-870, gnl|rheMac2|chr5 (175134152-175134267) | |
| 759-870, gnl|rheMac2|chr6 (67559200-67559076) | |
| 759-870, gnl|rn3|chr2 (31074498-31074390) | |
| 759-870, gnl|rn3|chr2 (31074388-31074492) | |
| 759-870, gnl|rn3|chr2 (31074381-31074505) | |
| 759-870, gnl|tetNig1|chr12 (1101583-1101704) | |
| 759-870, gnl|xenTro1|scaffold_120 (418045-417942) | |
| 759-870, gnl|xenTro1|scaffold_120 (418053-417925) | |
| 945-1292, gnl|bosTau2|chr20 (4636608-4636268) | |
| 945-1292, gnl|Mm7|chr13 (97208764-97209079) |
| Aligned organism(s): 75 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 306-532, gnl|bosTau2|chr20 (4648647-4648422) | |
| 306-532, gnl|canFam2|chr2 (57494213-57494015) | |
| 306-532, gnl|canFam2|chr2 (57494224-57494027) | |
| 306-532, gnl|danRer3|chr5 (48001843-48001655) | |
| 306-532, gnl|danRer3|chr5 (48001852-48001667) | |
| 306-532, gnl|dasNov1|scaffold_55638 (3963-3766) | |
| 306-532, gnl|dasNov1|scaffold_7519 (76748-76943) | |
| 306-532, gnl|echTel1|scaffold_232729 (7410-7608) | |
| 306-532, gnl|echTel1|scaffold_287386 (41162-40965) | |
| 306-532, gnl|fr1|chrUn (174872503-174872696) | |
| 306-532, gnl|fr1|chrUn (174872495-174872691) | |
| 306-532, gnl|hg17|chr5 (69398505-69398702) | |
| 306-532, gnl|Hg17|chr5 (70273938-70274172) | |
| 306-532, gnl|hg17|chr9 (20321714-20321910) | |
| 306-532, gnl|loxAfr1|scaffold_54076 (3789-3951) | |
| 306-532, gnl|loxAfr1|scaffold_54076 (3800-3939) | |
| 306-532, gnl|mm7|chr13 (97199186-97199386) | |
| 306-532, gnl|mm7|chr13 (97199177-97199374) | |
| 306-532, gnl|Mm7|chr13 (97199186-97199414) | |
| 306-532, gnl|monDom2|scaffold_60 (4116655-4116464) | |
| 306-532, gnl|oryCun1|scaffold_149581 (26220-26420) | |
| 306-532, gnl|oryCun1|scaffold_149581 (26211-26408) | |
| 306-532, gnl|panTro1|chr11 (20591472-20591667) | |
| 306-532, gnl|panTro1|chr4 (46774644-46774844) | |
| 306-532, gnl|rheMac2|chr15 (56670838-56670646) | |
| 306-532, gnl|rheMac2|chr6 (67562886-67562689) | |
| 306-532, gnl|rn3|chr2 (31070991-31071191) | |
| 306-532, gnl|rn3|chr2 (31070982-31071179) | |
| 306-532, gnl|tetNig1|chr12 (1100572-1100749) | |
| 306-532, gnl|tetNig1|chr12 (1100560-1100743) | |
| 306-532, gnl|xenTro1|scaffold_120 (420640-420443) | |
| 306-532, gnl|xenTro1|scaffold_120 (420652-420455) | |
| 759-870, gnl|bosTau2|chr20 (4645869-4645758) | |
| 759-870, gnl|canFam2|chr2 (57489476-57489591) | |
| 759-870, gnl|canFam2|chr2 (57489592-57489489) | |
| 759-870, gnl|canFam2|chr2 (57489600-57489476) | |
| 759-870, gnl|danRer3|chr5 (47996878-47996793) | |
| 759-870, gnl|danRer3|chr5 (47996902-47996786) | |
| 759-870, gnl|dasNov1|scaffold_55638 (1133-1009) | |
| 759-870, gnl|dasNov1|scaffold_7519 (77153-77251) | |
| 759-870, gnl|dasNov1|scaffold_84833 (5557-5465) | |
| 759-870, gnl|echTel1|scaffold_232729 (7956-7849) | |
| 759-870, gnl|echTel1|scaffold_232729 (7847-7951) | |
| 759-870, gnl|echTel1|scaffold_232729 (7846-7956) | |
| 759-870, gnl|fr1|chrUn (174873502-174873603) | |
| 759-870, gnl|fr1|chrUn (174873498-174873614) | |
| 759-870, gnl|hg17|chr4 (184324897-184325012) | |
| 759-870, gnl|hg17|chr5 (69402220-69402344) | |
| 759-870, gnl|Hg17|chr5 (70277649-70277760) | |
| 759-870, gnl|hg17|chr9 (20322119-20322224) | |
| 759-870, gnl|loxAfr1|scaffold_24093 (42099-41984) | |
| 759-870, gnl|loxAfr1|scaffold_24093 (41982-42083) | |
| 759-870, gnl|loxAfr1|scaffold_24093 (41975-42099) | |
| 759-870, gnl|mm7|chr13 (97203854-97203746) | |
| 759-870, gnl|mm7|chr13 (97203744-97203848) | |
| 759-870, gnl|mm7|chr13 (97203737-97203861) | |
| 759-870, gnl|Mm7|chr13 (97203741-97203852) | |
| 759-870, gnl|monDom2|scaffold_60 (4111837-4111713) | |
| 759-870, gnl|oryCun1|scaffold_149581 (30273-30161) | |
| 759-870, gnl|oryCun1|scaffold_149581 (30159-30263) | |
| 759-870, gnl|oryCun1|scaffold_149581 (30152-30274) | |
| 759-870, gnl|panTro1|chr11 (20591876-20591981) | |
| 759-870, gnl|panTro1|chr3 (202545121-202545236) | |
| 759-870, gnl|panTro1|chr4 (46778385-46778509) | |
| 759-870, gnl|rheMac2|chr15 (56670493-56670389) | |
| 759-870, gnl|rheMac2|chr5 (175134152-175134267) | |
| 759-870, gnl|rheMac2|chr6 (67559200-67559076) | |
| 759-870, gnl|rn3|chr2 (31074498-31074390) | |
| 759-870, gnl|rn3|chr2 (31074388-31074492) | |
| 759-870, gnl|rn3|chr2 (31074381-31074505) | |
| 759-870, gnl|tetNig1|chr12 (1101583-1101704) | |
| 759-870, gnl|xenTro1|scaffold_120 (418045-417942) | |
| 759-870, gnl|xenTro1|scaffold_120 (418053-417925) | |
| 945-1292, gnl|bosTau2|chr20 (4636608-4636268) | |
| 945-1292, gnl|Mm7|chr13 (97208764-97209079) |
| Expressed library(ies): 46 entry(ies) | More info |
| Expressed library(ies): 46 entry(ies) | Help | Less info |
| thg (0.633955) | |
| fco (0.471624) | |
| spc (0.453463) | |
| bfe (0.449573) | |
| fat (0.442282) | |
| hea (0.408998) | |
| ova (0.387397) | |
| elu (0.385356) | |
| sug (0.381874) | |
| sag (0.36543) | |
| mgm (0.360685) | |
| vin (0.332557) | |
| mga (0.32041) | |
| tbr (0.308356) | |
| isp (0.300752) | |
| cte (0.29274) | |
| ldo (0.291008) | |
| bla (0.248694) | |
| ebs (0.236602) | |
| ecc (0.23007) | |
| cbl (0.229595) | |
| aor (0.195274) | |
| sto (0.179824) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| cki (0.165235) | |
| cag (0.151194) | |
| ski (0.146735) | |
| lin (0.145603) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| che (0.136314) | |
| ste (0.135208) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| cov (0.132153) | |
| ese (0.126502) | |
| tra (0.123092) | |
| eep (0.122564) | |
| eru (0.120048) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 46 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| thg (0.633955) | |
| fco (0.471624) | |
| spc (0.453463) | |
| bfe (0.449573) | |
| fat (0.442282) | |
| hea (0.408998) | |
| ova (0.387397) | |
| elu (0.385356) | |
| sug (0.381874) | |
| sag (0.36543) | |
| mgm (0.360685) | |
| vin (0.332557) | |
| mga (0.32041) | |
| tbr (0.308356) | |
| isp (0.300752) | |
| cte (0.29274) | |
| ldo (0.291008) | |
| bla (0.248694) | |
| ebs (0.236602) | |
| ecc (0.23007) | |
| cbl (0.229595) | |
| aor (0.195274) | |
| sto (0.179824) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| cki (0.165235) | |
| cag (0.151194) | |
| ski (0.146735) | |
| lin (0.145603) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| che (0.136314) | |
| ste (0.135208) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| cov (0.132153) | |
| ese (0.126502) | |
| tra (0.123092) | |
| eep (0.122564) | |
| eru (0.120048) | |
| cty (0.10408) | |
| jej (0.0989218) |