Non-Coding RNA Search

Ss1.1-rdbla0125_j5.5

Sequence:


               
               TATTATTCAGTGGAAAAAATTGGAAGCCTGAAAGTTGGTGACCCCGTGTACCGGATGGTT
TAGTGACGCCTCTACCCCAGGGATACGGTTTCAGCATCTAGAAGGCACCGATCAGAAGTT
AAACCACCACAGCACCACCACCACGTGGGCAAGTATTTATGACTCCGCTTTGGCCATCTT
CACCCTGGATACGGATGTCCTTGGGGAGTTACAGATGCTCTGAGTTAATGCAAGGGACGT
TTTAGAGGTGATTTGAGAATAAGAACGTATATGGGTTTTAGGTAATGAAGTCTTTTCCAA
TAAATAAAATTGTTGATAAAATTATTTTGAATGTTATGGTAGCTCCTTCTCTTCTCGAAT
CCCTGACATCAATATTGACAAGTGAAGGATGTTGAAAGAACCAGCTAAAAAGCTACAATC
TTTTTTTTTTTTCTTAATGTTTCTGTTTTATTACCTATTATTCTGTTTTCAGAGAAATGG
GACGCAGCGGATTTTCTGATGTGTGTCCACACAAACACACAAATTCCTGTCGGTTTTCAC
ATCGCTGTTGAGTCCCGTTGACTTTTTGCTCGCCTGTTTTTGACCCCACCATGATGGAAT
CAGGTCGTCTTTGGTTCTGTATTTGATTATGCTTCTGTTGAGCCATGTAAAAGGAATGAT
AACGGACAGATACACCAAGCGCGAATTCCAAGTATGATCAAGAATAGACCTGGATTTGAA
AGAGAAGGGTATTTTGAGAGTAGGGCTGGAAGGAAGGAAGTTTGAACCTGTTTTTTTAGG
TGCAAATTTTTTTATAACCAAATAATTTGGTTTGCTTAATCCAGAGCTCTTTCTGAACCA
ATATGTGGATGAGTGAACTTATAATTTTGTGATTTCTTTAATAATAATAAATGTGATTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTATTCAGTGGAAAAAATTGGAAGCCTGAAAGTTGGTGACCCCGTGTACCGGATGGTT
TAGTGACGCCTCTACCCCAGGGATACGGTTTCAGCATCTAGAAGGCACCGATCAGAAGTT
AAACCACCACAGCACCACCACCACGTGGGCAAGTATTTATGACTCCGCTTTGGCCATCTT
CACCCTGGATACGGATGTCCTTGGGGAGTTACAGATGCTCTGAGTTAATGCAAGGGACGT
TTTAGAGGTGATTTGAGAATAAGAACGTATATGGGTTTTAGGTAATGAAGTCTTTTCCAA
TAAATAAAATTGTTGATAAAATTATTTTGAATGTTATGGTAGCTCCTTCTCTTCTCGAAT
CCCTGACATCAATATTGACAAGTGAAGGATGTTGAAAGAACCAGCTAAAAAGCTACAATC
TTTTTTTTTTTTCTTAATGTTTCTGTTTTATTACCTATTATTCTGTTTTCAGAGAAATGG
GACGCAGCGGATTTTCTGATGTGTGTCCACACAAACACACAAATTCCTGTCGGTTTTCAC
ATCGCTGTTGAGTCCCGTTGACTTTTTGCTCGCCTGTTTTTGACCCCACCATGATGGAAT
CAGGTCGTCTTTGGTTCTGTATTTGATTATGCTTCTGTTGAGCCATGTAAAAGGAATGAT
AACGGACAGATACACCAAGCGCGAATTCCAAGTATGATCAAGAATAGACCTGGATTTGAA
AGAGAAGGGTATTTTGAGAGTAGGGCTGGAAGGAAGGAAGTTTGAACCTGTTTTTTTAGG
TGCAAATTTTTTTATAACCAAATAATTTGGTTTGCTTAATCCAGAGCTCTTTCTGAACCA
ATATGTGGATGAGTGAACTTATAATTTTGTGATTTCTTTAATAATAATAAATGTGATTCT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               89-613, gnl|bosTau2|chr16 (10628644-10628125)
               

               
               89-613, gnl|Hg17|chr1 (217345657-217346200)
               

               
               89-613, gnl|Mm7|chr1 (184339461-184338965)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               89-613, gnl|bosTau2|chr16 (10628644-10628125)
               

               
               89-613, gnl|Hg17|chr1 (217345657-217346200)
               

               
               89-613, gnl|Mm7|chr1 (184339461-184338965)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               pro (1.02407)
               

               
               lun (0.451467)
               

               
               bla (0.373042)
               

               
               pan (0.23596)
               

               
               hea (0.204499)
               

               
               ldo (0.194005)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (1.02407)
               

               
               lun (0.451467)
               

               
               bla (0.373042)
               

               
               pan (0.23596)
               

               
               hea (0.204499)
               

               
               ldo (0.194005)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

	89-613, gnl\|bosTau2\|chr16 (10628644-10628125)
	89-613, gnl\|Hg17\|chr1 (217345657-217346200)
	89-613, gnl\|Mm7\|chr1 (184339461-184338965)

	pro (1.02407)
	lun (0.451467)
	bla (0.373042)
	pan (0.23596)
	hea (0.204499)
	ldo (0.194005)
	sag (0.182715)
	rec (0.17307)
	tra (0.123092)
	spc (0.113366)