Non-Coding RNA Search

Ss1.1-rdbla0126_j24.5

Sequence:


               
               AAAGCTGTAGATGACATGAAACAACAGCAGATGGCCCCAGAATATTAATCAGCATATCAT
TTAAGCAGCAGAAGAGATTCAAATAACTTTCCCACTGAGGGAAAGTTTAATTAGACATGA
CTTTGTTTTCAAAATTAGAATGGATGCGATATGTATCAATAAACTTGACTAGTACTAATC
TAATTTAGTACCAGACTCAAGTGTAGTACTAATGACATAGGGCATTAAGCTCTATTTTTG
TTAAAAATACTTTTTATAAAGTAAGATTTCTTTTATATCTCATGTCTAAGGGTCTATGCT
AATTCCCACGGATGAAGGATTCTGACATTTTTTTGGGCTGATACATCCATAGGAGGAGAT
AATATATGGAAAGCACTTCACTCACTGTCAGTTGCAGAGCTGCCCATGAGGCTCATAAGT
TATAGTCAAGTGAACACTATAATCATTTGAAATTACACCTTTGATCATAAAATTCATGCT
TGTTCTGTTTAGTGGAAGACAAAGCATGATTGCTGCTAGTACTAGTGGTACCCTCTACTT
CCTCTCAGCTGGTACTGATGGCAGAAGACAGGGATGATGTGGTCTACGGATGCAGCATCA
ACTCAGTAGCTGTCTGGGGTCAATCACCTAAGGGTCATGCTTTCCATTACCACAAATGAT
TGAGAGCTGGCTCACTGGATGGTTGATTTTGCCTAAGCATTTTTGAAGATTGAATAGCAT
GTGCAGCCAAAGAGCTAATTTGCTAATTAAGATGGAACAATCACTCTGAATGAAATATAA
CCAAAGAGTTTTCTGCAAGTTGTTAAAAAGTACTGGGGAGGCGTGGAAATGGGTCTCATG
ATAAAATGAGCCTGGGAATTGCTGAATTAATAAATCTAATCTGGTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGCTGTAGATGACATGAAACAACAGCAGATGGCCCCAGAATATTAATCAGCATATCAT
TTAAGCAGCAGAAGAGATTCAAATAACTTTCCCACTGAGGGAAAGTTTAATTAGACATGA
CTTTGTTTTCAAAATTAGAATGGATGCGATATGTATCAATAAACTTGACTAGTACTAATC
TAATTTAGTACCAGACTCAAGTGTAGTACTAATGACATAGGGCATTAAGCTCTATTTTTG
TTAAAAATACTTTTTATAAAGTAAGATTTCTTTTATATCTCATGTCTAAGGGTCTATGCT
AATTCCCACGGATGAAGGATTCTGACATTTTTTTGGGCTGATACATCCATAGGAGGAGAT
AATATATGGAAAGCACTTCACTCACTGTCAGTTGCAGAGCTGCCCATGAGGCTCATAAGT
TATAGTCAAGTGAACACTATAATCATTTGAAATTACACCTTTGATCATAAAATTCATGCT
TGTTCTGTTTAGTGGAAGACAAAGCATGATTGCTGCTAGTACTAGTGGTACCCTCTACTT
CCTCTCAGCTGGTACTGATGGCAGAAGACAGGGATGATGTGGTCTACGGATGCAGCATCA
ACTCAGTAGCTGTCTGGGGTCAATCACCTAAGGGTCATGCTTTCCATTACCACAAATGAT
TGAGAGCTGGCTCACTGGATGGTTGATTTTGCCTAAGCATTTTTGAAGATTGAATAGCAT
GTGCAGCCAAAGAGCTAATTTGCTAATTAAGATGGAACAATCACTCTGAATGAAATATAA
CCAAAGAGTTTTCTGCAAGTTGTTAAAAAGTACTGGGGAGGCGTGGAAATGGGTCTCATG
ATAAAATGAGCCTGGGAATTGCTGAATTAATAAATCTAATCTGGTTTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-887, gnl|bosTau2|chr9 (22634997-22635881)
               

               
               1-887, gnl|Hg17|chr6 (110820680-110819664)
               

               
               1-887, gnl|Mm7|chr10 (40435950-40437161)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-887, gnl|bosTau2|chr9 (22634997-22635881)
               

               
               1-887, gnl|Hg17|chr6 (110820680-110819664)
               

               
               1-887, gnl|Mm7|chr10 (40435950-40437161)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               mgp (0.461361)
               

               
               vin (0.332557)
               

               
               kid (0.259471)
               

               
               aor (0.195274)
               

               
               tbr (0.154178)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.461361)
               

               
               vin (0.332557)
               

               
               kid (0.259471)
               

               
               aor (0.195274)
               

               
               tbr (0.154178)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

	1-887, gnl\|bosTau2\|chr9 (22634997-22635881)
	1-887, gnl\|Hg17\|chr6 (110820680-110819664)
	1-887, gnl\|Mm7\|chr10 (40435950-40437161)

	mgp (0.461361)
	vin (0.332557)
	kid (0.259471)
	aor (0.195274)
	tbr (0.154178)
	sug (0.127291)
	bla (0.124347)
	tra (0.123092)
	spc (0.113366)