Ss1.1-rdbla0127_f9.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAAAACCTTATGTTTGTAGACATTTACCTATGCTCATTGAATTTGTCTCATTAAATGCC TTCCTAAATGAAAAGGAGGCAAATGATAGCATATCTGGCCAGCTGCAACCTCCTGCCTTG ACCTTCATTCCTAGGTTTTCTTTGTTGTTGTGACACTTGATTAAGTGGCCTTGAGGTCAT TTTGTAATTTTGCTAGTCATTAGCAAATTCACTTTTTTTTTTTTTTTTTTGTCTTTTTAG CTATTTCCTGGGACCTTCCATATGCCGTGAGTGCAACCCTAAAAAAAAAGAAAAAAGAAA ATGGTGTTTTTACTGAAAGAAAAAAAAAAAGCAAATATGAGTCCAGTTTAATTCATATTG TATATCATCAGGTTACTGCATTTTATATATACGCATATTAAGGTAAAAAGAACTATGAAT ATAGGAATTCACTTATTCATTCATTCTATAAACATTTATTACAATTAAATGTAAACAGGT TCAATTTACCTTAAAAAGAAGGGCTGCAAACTTACAGCAATTCTCACGTAAGAGTAAAAC ATTTGAAGCATTATCTGTCACACTTTCTTTTTTCTTTTTTTCTTTTTGGCCATGGCCACA GCATGCAGCTGCAGTCACAACGCCAGATCCTTAACCTGCTGAGACACCAGGGAACTCCTA TTACAGTTTTTATTCAACAGTCTGCTAAAAGTCACACCTGGTGCGGAAATTTAAATTAAA GGTAAATATTAGCATTGGAGAGACAAATTGTTATCTTACAGTAGGATTATCTACCTAGAA CATCTAAGGACTGATTAAACCAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAAAACCTTATGTTTGTAGACATTTACCTATGCTCATTGAATTTGTCTCATTAAATGCC TTCCTAAATGAAAAGGAGGCAAATGATAGCATATCTGGCCAGCTGCAACCTCCTGCCTTG ACCTTCATTCCTAGGTTTTCTTTGTTGTTGTGACACTTGATTAAGTGGCCTTGAGGTCAT TTTGTAATTTTGCTAGTCATTAGCAAATTCACTTTTTTTTTTTTTTTTTTGTCTTTTTAG CTATTTCCTGGGACCTTCCATATGCCGTGAGTGCAACCCTAAAAAAAAAGAAAAAAGAAA ATGGTGTTTTTACTGAAAGAAAAAAAAAAAGCAAATATGAGTCCAGTTTAATTCATATTG TATATCATCAGGTTACTGCATTTTATATATACGCATATTAAGGTAAAAAGAACTATGAAT ATAGGAATTCACTTATTCATTCATTCTATAAACATTTATTACAATTAAATGTAAACAGGT TCAATTTACCTTAAAAAGAAGGGCTGCAAACTTACAGCAATTCTCACGTAAGAGTAAAAC ATTTGAAGCATTATCTGTCACACTTTCTTTTTTCTTTTTTTCTTTTTGGCCATGGCCACA GCATGCAGCTGCAGTCACAACGCCAGATCCTTAACCTGCTGAGACACCAGGGAACTCCTA TTACAGTTTTTATTCAACAGTCTGCTAAAAGTCACACCTGGTGCGGAAATTTAAATTAAA GGTAAATATTAGCATTGGAGAGACAAATTGTTATCTTACAGTAGGATTATCTACCTAGAA CATCTAAGGACTGATTAAACCAAAAAAAAAAAAAAA |
| Aligned organism(s): 20 entry(ies) | More info |
| Aligned organism(s): 20 entry(ies) | Help | Less info |
| 31-214, gnl|bosTau2|chr26 (15422409-15422588) | |
| 31-214, gnl|canFam2|chr28 (18324967-18325211) | |
| 31-214, gnl|dasNov1|scaffold_3475 (81556-81797) | |
| 31-214, gnl|echTel1|scaffold_293300 (75137-75373) | |
| 31-214, gnl|hg17|chr10 (104613397-104613646) | |
| 31-214, gnl|Hg17|chr10 (104613490-104613671) | |
| 31-214, gnl|loxAfr1|scaffold_19068 (41371-41102) | |
| 31-214, gnl|mm7|chr19 (46599124-46599381) | |
| 31-214, gnl|monDom2|scaffold_14 (60445247-60444992) | |
| 31-214, gnl|panTro1|chr8 (106376154-106376400) | |
| 31-214, gnl|rheMac2|chr9 (102545098-102545347) | |
| 31-214, gnl|rn3|chr1 (252271244-252271437) | |
| 379-557, gnl|bosTau2|chr26 (15422938-15423122) | |
| 379-557, gnl|canFam2|chr28 (18325717-18325889) | |
| 379-557, gnl|dasNov1|scaffold_3475 (82109-82401) | |
| 379-557, gnl|echTel1|scaffold_293300 (75717-75898) | |
| 379-557, gnl|hg17|chr10 (104613969-104614171) | |
| 379-557, gnl|loxAfr1|scaffold_19068 (40221-40037) | |
| 379-557, gnl|panTro1|chr8 (106376723-106376925) | |
| 379-557, gnl|rheMac2|chr9 (102545670-102545872) |
| Aligned organism(s): 20 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 31-214, gnl|bosTau2|chr26 (15422409-15422588) | |
| 31-214, gnl|canFam2|chr28 (18324967-18325211) | |
| 31-214, gnl|dasNov1|scaffold_3475 (81556-81797) | |
| 31-214, gnl|echTel1|scaffold_293300 (75137-75373) | |
| 31-214, gnl|hg17|chr10 (104613397-104613646) | |
| 31-214, gnl|Hg17|chr10 (104613490-104613671) | |
| 31-214, gnl|loxAfr1|scaffold_19068 (41371-41102) | |
| 31-214, gnl|mm7|chr19 (46599124-46599381) | |
| 31-214, gnl|monDom2|scaffold_14 (60445247-60444992) | |
| 31-214, gnl|panTro1|chr8 (106376154-106376400) | |
| 31-214, gnl|rheMac2|chr9 (102545098-102545347) | |
| 31-214, gnl|rn3|chr1 (252271244-252271437) | |
| 379-557, gnl|bosTau2|chr26 (15422938-15423122) | |
| 379-557, gnl|canFam2|chr28 (18325717-18325889) | |
| 379-557, gnl|dasNov1|scaffold_3475 (82109-82401) | |
| 379-557, gnl|echTel1|scaffold_293300 (75717-75898) | |
| 379-557, gnl|hg17|chr10 (104613969-104614171) | |
| 379-557, gnl|loxAfr1|scaffold_19068 (40221-40037) | |
| 379-557, gnl|panTro1|chr8 (106376723-106376925) | |
| 379-557, gnl|rheMac2|chr9 (102545670-102545872) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| vin (0.332557) | |
| spc (0.226732) | |
| nep (0.183925) | |
| gul (0.177588) | |
| cut (0.169924) | |
| cki (0.165235) | |
| ese (0.126502) | |
| bla (0.124347) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| vin (0.332557) | |
| spc (0.226732) | |
| nep (0.183925) | |
| gul (0.177588) | |
| cut (0.169924) | |
| cki (0.165235) | |
| ese (0.126502) | |
| bla (0.124347) |