Non-Coding RNA Search

Ss1.1-rdbla0127_j23.5.5

Sequence:


               
               AGGCGCAGCATACCGAGTGGACATTTTGGTCTTTGTCCGCGGGTCAGTCCGGCCCCTGGG
TCCACGTGGCGCGAAAATAGGAGGTTATAAGCTGACCAAACTGTATGTGAGTCTCTGTTG
AAGCAAGAAGACGAACTCTGAATGGTGGAGAAAAAAGTGGAAATGAAATTTGTCCAGGTC
ATACACAGAGAAGCCCTACAAATGTAAGAAATGTGGAAGTACCTTCAGCCAAAAGTAAAT
TTTCATTCATCAAAAAATTCGTACTGGAGAGAAACCTTGTGAATGTGGGAAAGCTTCCAT
TCAGATGTCACACCTCAGTCAGCAGAGAATTTGTAGTGGGGAAAACCCCTTTGCTTGTAA
GGTATGTGGGAAGGTCTTCAGCCACAAATCAACTCTCACTGAGCATGAGCATTTTCATAA
TAGAGAGAAACCTTTTGAATGTAATGAATGTGGAAAAGCCTTCAGCCAAAAGCAGTATGT
CATTAAACATCAGAACACCCATACTGGAGAGAAGCTTTTTGAATGTAATGAATGTGGAAA
ATCCTTCAGCCAGAAGGAAAACCTTCTTACCCATCAAAAGATTCATACTGGAGAGAAACC
TTTTGAGTGTAAGGATTGCGGGAAAGCTTTCATTCAGAAGTCAAACCTCATCAGGCACCA
GAGAACTCACACAGGAGAGAAGCCGTTTGTATGTAAGGAGTGTGGGAAAACCTTCAGTGG
TAAATCAAACCTTACTGAACACGAGAAAATCCATATTGGAGAGAAACCGTTTAAGTGTAG
TGAATGTGGAACAGCTTTTGGTCAGAAGAAGTACCTCATAAAACATCAAAATATTCACAC
TGGAGAGAAACCCTATGAATGTAATGAATGTGGAAAAGCCTTCTCTCAGCGAACATCACT
TATTGTACATGTGAGAATTCATTCAGGTGATAAGCCTTATGAATGCAATGTATGTGGAAA
AGCCTTCTCTCAAAGTTCATCTCTTACTGTACATGTGAGAAGCCATACAGGGGAGAAACC
CTATGGTTGTAATGAATGTGGGAAAGCTTTCTCTCAATTCTCAACCCTTGCTCTACATTT
GAGAATACACACAGGTAAGAAGCCTTATCAATGTAGTGAATGTGGGAAAGCTTTCAGCCA
GAAGTCACACCACATTAGACACCAGAAGATTCATACTCATTAAAAACCTGTGGATATCAT
AAAAATTGAAAAGTGTTCATCAGGAATTTATACCTCAGAACACATCAGAAATAATCGTTG
TGAAGGAAAGCATCACAAACAAGGGAAACAAAAGCTGTTAACTTAAAAGGACACCAGAGA
ATTCATCTTGAAGCAAAAGACATTTGTTTGATAAAAATCCTATATCCAACAGAAAACAAA
CAGCAAAGGTAATACTGAAACTTACAGTGCATTTCCACTACAATTGGGAGTGGAAAACAT
GCTTACCATTGCTATCTGCATAGATCTGGAGATGTTCACCAATGTAAAAAAAAAAAAAAA
AAAATTGTAAGTATTAGGAAGAGACCTATGATATCAATTTAGCAGAACAGAAGAGATTCT
GGAAACACCTATGCATTTATTAGAATTTATAATATAATAGAAATGGCATCAGGCGAAGAT
AATGGAACTATTTACAAAATGATTTGGAGATAATTTTTTCTCTGAGAAAAAAAATAATAG
ACAGTGAACTATACACAAAGATAAGATCCAAGAGGATTAAAAACAGGAATATGGAAAAGC
TGTATACTAAAATGGTTATGACCTTGGAAGTTGGGAAACATTCCTTATAGCAAATTGAAA
AATACCTGGCAATTTTACTATGCTCGGGAAATACATACCGGGCTATTTACTGTGGCATGA
TTTGCAGTAGTCATAAATTGGAAACAACTTAAATGCCCATCAGGAACAAATGGGAAATAC
TTAATGATGGAATGCTGTATATCTGTAAAATGTAGTAAATGAGATCAATATGTATTACAG
AGAAAGATCTCAAAAGTCATGTTGAGGGGGAAAGATAAAGTTGCAGAGTGACATATAATA
CAATGACATTTTTGTAAATTTGAATTAAAACTTCCCTCACAAATTCATTGCTATATATTG
GTAATGGATACATATATGTGTGTATGTTTTTAAAATGTTTCTGAAGTGGATTGGAAGGAT
ACAGACCAAACTCTTGATAGTGGTTGCCTATGAAGAGAGGAGAAAGGGAAAGGGGGTGTG
TGTGGGGGAGGGGGAGGGAGGTTTGGTTAGCTGAGACTTCAGTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCGCAGCATACCGAGTGGACATTTTGGTCTTTGTCCGCGGGTCAGTCCGGCCCCTGGG
TCCACGTGGCGCGAAAATAGGAGGTTATAAGCTGACCAAACTGTATGTGAGTCTCTGTTG
AAGCAAGAAGACGAACTCTGAATGGTGGAGAAAAAAGTGGAAATGAAATTTGTCCAGGTC
ATACACAGAGAAGCCCTACAAATGTAAGAAATGTGGAAGTACCTTCAGCCAAAAGTAAAT
TTTCATTCATCAAAAAATTCGTACTGGAGAGAAACCTTGTGAATGTGGGAAAGCTTCCAT
TCAGATGTCACACCTCAGTCAGCAGAGAATTTGTAGTGGGGAAAACCCCTTTGCTTGTAA
GGTATGTGGGAAGGTCTTCAGCCACAAATCAACTCTCACTGAGCATGAGCATTTTCATAA
TAGAGAGAAACCTTTTGAATGTAATGAATGTGGAAAAGCCTTCAGCCAAAAGCAGTATGT
CATTAAACATCAGAACACCCATACTGGAGAGAAGCTTTTTGAATGTAATGAATGTGGAAA
ATCCTTCAGCCAGAAGGAAAACCTTCTTACCCATCAAAAGATTCATACTGGAGAGAAACC
TTTTGAGTGTAAGGATTGCGGGAAAGCTTTCATTCAGAAGTCAAACCTCATCAGGCACCA
GAGAACTCACACAGGAGAGAAGCCGTTTGTATGTAAGGAGTGTGGGAAAACCTTCAGTGG
TAAATCAAACCTTACTGAACACGAGAAAATCCATATTGGAGAGAAACCGTTTAAGTGTAG
TGAATGTGGAACAGCTTTTGGTCAGAAGAAGTACCTCATAAAACATCAAAATATTCACAC
TGGAGAGAAACCCTATGAATGTAATGAATGTGGAAAAGCCTTCTCTCAGCGAACATCACT
TATTGTACATGTGAGAATTCATTCAGGTGATAAGCCTTATGAATGCAATGTATGTGGAAA
AGCCTTCTCTCAAAGTTCATCTCTTACTGTACATGTGAGAAGCCATACAGGGGAGAAACC
CTATGGTTGTAATGAATGTGGGAAAGCTTTCTCTCAATTCTCAACCCTTGCTCTACATTT
GAGAATACACACAGGTAAGAAGCCTTATCAATGTAGTGAATGTGGGAAAGCTTTCAGCCA
GAAGTCACACCACATTAGACACCAGAAGATTCATACTCATTAAAAACCTGTGGATATCAT
AAAAATTGAAAAGTGTTCATCAGGAATTTATACCTCAGAACACATCAGAAATAATCGTTG
TGAAGGAAAGCATCACAAACAAGGGAAACAAAAGCTGTTAACTTAAAAGGACACCAGAGA
ATTCATCTTGAAGCAAAAGACATTTGTTTGATAAAAATCCTATATCCAACAGAAAACAAA
CAGCAAAGGTAATACTGAAACTTACAGTGCATTTCCACTACAATTGGGAGTGGAAAACAT
GCTTACCATTGCTATCTGCATAGATCTGGAGATGTTCACCAATGTAAAAAAAAAAAAAAA
AAAATTGTAAGTATTAGGAAGAGACCTATGATATCAATTTAGCAGAACAGAAGAGATTCT
GGAAACACCTATGCATTTATTAGAATTTATAATATAATAGAAATGGCATCAGGCGAAGAT
AATGGAACTATTTACAAAATGATTTGGAGATAATTTTTTCTCTGAGAAAAAAAATAATAG
ACAGTGAACTATACACAAAGATAAGATCCAAGAGGATTAAAAACAGGAATATGGAAAAGC
TGTATACTAAAATGGTTATGACCTTGGAAGTTGGGAAACATTCCTTATAGCAAATTGAAA
AATACCTGGCAATTTTACTATGCTCGGGAAATACATACCGGGCTATTTACTGTGGCATGA
TTTGCAGTAGTCATAAATTGGAAACAACTTAAATGCCCATCAGGAACAAATGGGAAATAC
TTAATGATGGAATGCTGTATATCTGTAAAATGTAGTAAATGAGATCAATATGTATTACAG
AGAAAGATCTCAAAAGTCATGTTGAGGGGGAAAGATAAAGTTGCAGAGTGACATATAATA
CAATGACATTTTTGTAAATTTGAATTAAAACTTCCCTCACAAATTCATTGCTATATATTG
GTAATGGATACATATATGTGTGTATGTTTTTAAAATGTTTCTGAAGTGGATTGGAAGGAT
ACAGACCAAACTCTTGATAGTGGTTGCCTATGAAGAGAGGAGAAAGGGAAAGGGGGTGTG
TGTGGGGGAGGGGGAGGGAGGTTTGGTTAGCTGAGACTTCAGTTTTTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|2501710|sp|Q28151|OZF_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|2501710|sp|Q28151|OZF_BOVIN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               971-1090, - strand, RNAz p=0.899771

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               971-1090, - strand, RNAz p=0.899771

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               78-179, gnl|bosTau2|chr18 (41982035-41982136)
               


               
               187-1352, gnl|bosTau2|chr18 (42985558-42984390)
               

               
               187-1352, gnl|Mm7|chr7 (26981893-26980734)
               


               
               284-1321, gnl|bosTau2|chr18 (52447387-52448432)
               

               
               284-1321, gnl|Hg17|chr7 (63172006-63173153)
               


               
               371-1288, gnl|bosTau2|chr10 (8996900-8995984)
               

               
               371-1288, gnl|Hg17|chr19 (42818687-42817755)
               

               
               371-1288, gnl|Mm7|chr2 (127310328-127309499)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               78-179, gnl|bosTau2|chr18 (41982035-41982136)
               


               
               187-1352, gnl|bosTau2|chr18 (42985558-42984390)
               

               
               187-1352, gnl|Mm7|chr7 (26981893-26980734)
               


               
               284-1321, gnl|bosTau2|chr18 (52447387-52448432)
               

               
               284-1321, gnl|Hg17|chr7 (63172006-63173153)
               


               
               371-1288, gnl|bosTau2|chr10 (8996900-8995984)
               

               
               371-1288, gnl|Hg17|chr19 (42818687-42817755)
               

               
               371-1288, gnl|Mm7|chr2 (127310328-127309499)

Expressed library(ies): 25 entry(ies)

More info

Expressed library(ies): 25 entry(ies)

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               isp (0.601504)
               

               
               liv (0.438853)
               

               
               lin (0.436808)
               

               
               gul (0.355177)
               

               
               rec (0.346141)
               

               
               mga (0.32041)
               

               
               sme (0.305437)
               

               
               ste (0.270416)
               

               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.601504)
               

               
               liv (0.438853)
               

               
               lin (0.436808)
               

               
               gul (0.355177)
               

               
               rec (0.346141)
               

               
               mga (0.32041)
               

               
               sme (0.305437)
               

               
               ste (0.270416)
               

               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	78-179, gnl\|bosTau2\|chr18 (41982035-41982136)

	187-1352, gnl\|bosTau2\|chr18 (42985558-42984390)
	187-1352, gnl\|Mm7\|chr7 (26981893-26980734)

	284-1321, gnl\|bosTau2\|chr18 (52447387-52448432)
	284-1321, gnl\|Hg17\|chr7 (63172006-63173153)

	371-1288, gnl\|bosTau2\|chr10 (8996900-8995984)
	371-1288, gnl\|Hg17\|chr19 (42818687-42817755)
	371-1288, gnl\|Mm7\|chr2 (127310328-127309499)

	isp (0.601504)
	liv (0.438853)
	lin (0.436808)
	gul (0.355177)
	rec (0.346141)
	mga (0.32041)
	sme (0.305437)
	ste (0.270416)
	bla (0.248694)
	tra (0.246184)
	mgp (0.230681)
	ece (0.229305)
	mcp (0.170648)
	nco (0.161734)
	tbr (0.154178)
	ski (0.146735)
	spl (0.143184)
	hlv (0.139256)
	nca (0.136874)
	ret (0.128733)
	sug (0.127291)
	pgl (0.118483)
	ecc (0.115035)
	spc (0.113366)
	cty (0.10408)