Non-Coding RNA Search

Ss1.1-rdbla0127_j9.5.5

Sequence:


               
               AGCCAGAGCCCCCCCCACCCGGCCCCACCGCCGGCCAGAGCCAGGAGCCCAGGTGTGGTG
GAGAACTTCAGCTACAGGATGTTGACAACATTGCTGCCACTGCTGCCTCTGCTGTTCCTG
CCCGGCCGGGCCCTCTGTAGCCAGAAAGTCTCAGATGGCCCGCGGGACCTCCGCATGCTC
CAGGTCTCCTACTTCCGCAGCCCCTCTCAAGTGTGGTACCAGGGCAACGCGACGCTGGGG
GGTATTCTGACCCACGTGCTGGAAGGTCCAGGCCACAATGTCACGATCCAACAGCTGCAG
CCCTTGCAAGAGCCGGAGAGCTGGGAACTCACAAAGAACAGCCTGGAGGCTTACCTGAAG
GAGTTCCAGGGTCTGGTGCAGGTGGTGCACCAAGAGCGGGGCGTGGCCTTTCCTCTCATC
GTTCGCTGCTTGCTGGGCTGCGAGCTGCCTCCTGAGGGGTCCAGAGCCCGAGTCTTCTTC
GAAGTGGCTGTGAATGGGAGCTCCTTCATGAGTTTCCAGCCAGAGACGGCCTCATGGATG
GCAAGGCCTCAGGCGGCCTCCAGAGTGGTCACCTACACCGTGGAGCAGCTCAACAAGTAC
AATCGTACTCGGTACGAACTGCGGGAATTTCTGCAGGACACCTGTGTGCAGTACGTGCAG
AAACACATCACCACGCATAACTTGAAAGGAAGCCAAACAGGCCGCTCCTACACGCCACTG
GTCCTGGGCATCCTGGTGGGCTGTTTCATCATCGCAGGAGTGGCTCTATGCATCTTCCTG
TATGTAGGTGGACGGCGGCGATGTTAATTACTCACTGGCTCCCTCTGGAAAAGAGCTACA
CGGACGGGGGTCTGGCAAGGGAAGATCTCAGCTCACTGCCAAACCACAGCAATTTCCCCA
TCTAGGACATTATATTCTAGAAGACTTGGGGTGGCAGTTCATTTCTTCTCCAAGATGTGC
CCACCAAGAATTTGAGGGAGGGGAGAAGAGGAGCCTAGGTAAACAGGGTACTTGGTTTGC
TAAGAACCTAAGAACTTACATGCTTTGCTGAATTAGTCTGAGAAGTGAATGCATCTCCAT
ATTCGTGGAAAATAGAGGATGGAGTTGGGGCAATGGGGGTGGTCCATGGCCCATCTACCA
AAGACAGAAACACCTGAGGCCTTCAAAAGACCTAGCCAAATAAAACAAGTCTTCCACAAC
CCAAGTAACCAATATTCAGCGACTCCAGGTATGTCAGACTTAGGTCGGGACACTGGTACA
ATAAAGGTAGAATTAACCAGAGAAATGATCGAAGGGTAAAATCCAAGTAACATGGGAGCA
AGGAGCTGTTCATCAATCATTAATAATATTATTAAAATTACAATGTTATTAAAATATAAA
TTCCTTAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCAGAGCCCCCCCCACCCGGCCCCACCGCCGGCCAGAGCCAGGAGCCCAGGTGTGGTG
GAGAACTTCAGCTACAGGATGTTGACAACATTGCTGCCACTGCTGCCTCTGCTGTTCCTG
CCCGGCCGGGCCCTCTGTAGCCAGAAAGTCTCAGATGGCCCGCGGGACCTCCGCATGCTC
CAGGTCTCCTACTTCCGCAGCCCCTCTCAAGTGTGGTACCAGGGCAACGCGACGCTGGGG
GGTATTCTGACCCACGTGCTGGAAGGTCCAGGCCACAATGTCACGATCCAACAGCTGCAG
CCCTTGCAAGAGCCGGAGAGCTGGGAACTCACAAAGAACAGCCTGGAGGCTTACCTGAAG
GAGTTCCAGGGTCTGGTGCAGGTGGTGCACCAAGAGCGGGGCGTGGCCTTTCCTCTCATC
GTTCGCTGCTTGCTGGGCTGCGAGCTGCCTCCTGAGGGGTCCAGAGCCCGAGTCTTCTTC
GAAGTGGCTGTGAATGGGAGCTCCTTCATGAGTTTCCAGCCAGAGACGGCCTCATGGATG
GCAAGGCCTCAGGCGGCCTCCAGAGTGGTCACCTACACCGTGGAGCAGCTCAACAAGTAC
AATCGTACTCGGTACGAACTGCGGGAATTTCTGCAGGACACCTGTGTGCAGTACGTGCAG
AAACACATCACCACGCATAACTTGAAAGGAAGCCAAACAGGCCGCTCCTACACGCCACTG
GTCCTGGGCATCCTGGTGGGCTGTTTCATCATCGCAGGAGTGGCTCTATGCATCTTCCTG
TATGTAGGTGGACGGCGGCGATGTTAATTACTCACTGGCTCCCTCTGGAAAAGAGCTACA
CGGACGGGGGTCTGGCAAGGGAAGATCTCAGCTCACTGCCAAACCACAGCAATTTCCCCA
TCTAGGACATTATATTCTAGAAGACTTGGGGTGGCAGTTCATTTCTTCTCCAAGATGTGC
CCACCAAGAATTTGAGGGAGGGGAGAAGAGGAGCCTAGGTAAACAGGGTACTTGGTTTGC
TAAGAACCTAAGAACTTACATGCTTTGCTGAATTAGTCTGAGAAGTGAATGCATCTCCAT
ATTCGTGGAAAATAGAGGATGGAGTTGGGGCAATGGGGGTGGTCCATGGCCCATCTACCA
AAGACAGAAACACCTGAGGCCTTCAAAAGACCTAGCCAAATAAAACAAGTCTTCCACAAC
CCAAGTAACCAATATTCAGCGACTCCAGGTATGTCAGACTTAGGTCGGGACACTGGTACA
ATAAAGGTAGAATTAACCAGAGAAATGATCGAAGGGTAAAATCCAAGTAACATGGGAGCA
AGGAGCTGTTCATCAATCATTAATAATATTATTAAAATTACAATGTTATTAAAATATAAA
TTCCTTAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|1083024|pir||B55945

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1083024|pir||B55945

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               157-409, gnl|bosTau2|chr13 (47561333-47561585)
               

               
               157-409, gnl|Hg17|chr20 (33226165-33226417)
               

               
               157-409, gnl|Mm7|chr2 (155494202-155494460)
               


               
               410-689, gnl|bosTau2|chr13 (47561908-47562187)
               

               
               410-689, gnl|Hg17|chr20 (33227632-33227911)
               

               
               410-689, gnl|Mm7|chr2 (155495098-155495386)
               


               
               868-1359, gnl|bosTau2|chr13 (47562601-47563089)
               

               
               868-1359, gnl|Hg17|chr20 (33228335-33228808)
               

               
               868-1359, gnl|Mm7|chr2 (155495810-155496264)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               157-409, gnl|bosTau2|chr13 (47561333-47561585)
               

               
               157-409, gnl|Hg17|chr20 (33226165-33226417)
               

               
               157-409, gnl|Mm7|chr2 (155494202-155494460)
               


               
               410-689, gnl|bosTau2|chr13 (47561908-47562187)
               

               
               410-689, gnl|Hg17|chr20 (33227632-33227911)
               

               
               410-689, gnl|Mm7|chr2 (155495098-155495386)
               


               
               868-1359, gnl|bosTau2|chr13 (47562601-47563089)
               

               
               868-1359, gnl|Hg17|chr20 (33228335-33228808)
               

               
               868-1359, gnl|Mm7|chr2 (155495810-155496264)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               aor (0.976372)
               

               
               jca (0.34188)
               

               
               gul (0.177588)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               cty (0.10408)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.976372)
               

               
               jca (0.34188)
               

               
               gul (0.177588)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               cty (0.10408)

	157-409, gnl\|bosTau2\|chr13 (47561333-47561585)
	157-409, gnl\|Hg17\|chr20 (33226165-33226417)
	157-409, gnl\|Mm7\|chr2 (155494202-155494460)

	410-689, gnl\|bosTau2\|chr13 (47561908-47562187)
	410-689, gnl\|Hg17\|chr20 (33227632-33227911)
	410-689, gnl\|Mm7\|chr2 (155495098-155495386)

	868-1359, gnl\|bosTau2\|chr13 (47562601-47563089)
	868-1359, gnl\|Hg17\|chr20 (33228335-33228808)
	868-1359, gnl\|Mm7\|chr2 (155495810-155496264)

	aor (0.976372)
	jca (0.34188)
	gul (0.177588)
	cli (0.152812)
	cag (0.151194)
	spl (0.143184)
	pla (0.133672)
	sug (0.127291)
	bla (0.124347)
	cly (0.120642)
	cty (0.10408)