Non-Coding RNA Search

Ss1.1-rdbla0128_g2.5

Sequence:


               
               ACCGCCTCATTGAGCCAAACACCGCGGTGACCTGGCGCTTCGGGATCCCGGGGCTGAAGA
AAACCATGGACTGGTTTGGCTACTACGGAGGCCCCTGCCGCGCCCCCTTGCAGGAGCTGA
ACCCGGCCCAGGAGGAGGTGCTGCGTTTGGATTTCACCAGCAACGGCTGGCTCTGAGGAC
CAGGAGGGGACGGCCAACCTGCTCCCATCTCAGCACCTGCCTTGCACTGGCAGCCTGAAG
AGGAACATGGGTGGCGAGGGTTCGAGGCTCCCTTTCTCGCTTCAGTCCTCCAGGTAGCCT
CTCTCCTGGCACTGCCATCACGCTCATCTCCTGCTCTCCCAGCCCAACAACCTCTGGCAT
TTGTATCCTGAAATCGGGGTCTCTGGAGACCTTCAGCCTGGGAAGGAGCAAAGTGACTTG
TCTCCCTACTGTTCCTTCCTCTCCCCTGAGACATGTGAACCAGCAGCCAGAGGGGACGGA
CAAGGGGGCAGTTGGGCACCAATAAGCCATGTTTTACCGAAAGGAAGACTGCTTAGACTT
GGGGGTACAAACCCAAGTCCAGTACAACACAGCGGGAAACCCAGGCAACTCCTAGGAACC
CAAGTTCTGACTCCTTGCACTCGTTTGGGAAACCTGATCAGAAAGGGGTCACTGGTCCTT
CAATAGACCCCCGAGCTGCATTCTAGCCCTTTCCTAAATCTGTGTGCTTCATCTCACATC
GTCTCTAGCCTTGATCCCCACGGTCAAGTGCACCAGTGAGACAGCCCCATGGCTTGCTAG
AACTGGTAAATAATGACACCTGGTGGATAAATGCTATATTCTAGAAAACTGTTCTAGCCA
CCCCGAGTCTGAAACATTAGGAAAAGGGACTTGGCCTGAGACAGGACCATCCCCTTGTCT
ATACACACTCTGCTTCTATTGTTGAGAACAATTTGTTATTGCAATAAAGCTTAATAGGTT
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCGCCTCATTGAGCCAAACACCGCGGTGACCTGGCGCTTCGGGATCCCGGGGCTGAAGA
AAACCATGGACTGGTTTGGCTACTACGGAGGCCCCTGCCGCGCCCCCTTGCAGGAGCTGA
ACCCGGCCCAGGAGGAGGTGCTGCGTTTGGATTTCACCAGCAACGGCTGGCTCTGAGGAC
CAGGAGGGGACGGCCAACCTGCTCCCATCTCAGCACCTGCCTTGCACTGGCAGCCTGAAG
AGGAACATGGGTGGCGAGGGTTCGAGGCTCCCTTTCTCGCTTCAGTCCTCCAGGTAGCCT
CTCTCCTGGCACTGCCATCACGCTCATCTCCTGCTCTCCCAGCCCAACAACCTCTGGCAT
TTGTATCCTGAAATCGGGGTCTCTGGAGACCTTCAGCCTGGGAAGGAGCAAAGTGACTTG
TCTCCCTACTGTTCCTTCCTCTCCCCTGAGACATGTGAACCAGCAGCCAGAGGGGACGGA
CAAGGGGGCAGTTGGGCACCAATAAGCCATGTTTTACCGAAAGGAAGACTGCTTAGACTT
GGGGGTACAAACCCAAGTCCAGTACAACACAGCGGGAAACCCAGGCAACTCCTAGGAACC
CAAGTTCTGACTCCTTGCACTCGTTTGGGAAACCTGATCAGAAAGGGGTCACTGGTCCTT
CAATAGACCCCCGAGCTGCATTCTAGCCCTTTCCTAAATCTGTGTGCTTCATCTCACATC
GTCTCTAGCCTTGATCCCCACGGTCAAGTGCACCAGTGAGACAGCCCCATGGCTTGCTAG
AACTGGTAAATAATGACACCTGGTGGATAAATGCTATATTCTAGAAAACTGTTCTAGCCA
CCCCGAGTCTGAAACATTAGGAAAAGGGACTTGGCCTGAGACAGGACCATCCCCTTGTCT
ATACACACTCTGCTTCTATTGTTGAGAACAATTTGTTATTGCAATAAAGCTTAATAGGTT
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               484-603, + strand, RNAz p=0.979874

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               484-603, + strand, RNAz p=0.979874

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_138413, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_138413, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               26-444, gnl|bosTau2|chr26 (10501071-10500641)
               

               
               26-444, gnl|Hg17|chr10 (99361256-99361698)
               

               
               26-444, gnl|Mm7|chr19 (41964026-41966583)
               


               
               484-963, gnl|bosTau2|chr26 (10500575-10500082)
               

               
               484-963, gnl|Hg17|chr10 (99362050-99362549)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-444, gnl|bosTau2|chr26 (10501071-10500641)
               

               
               26-444, gnl|Hg17|chr10 (99361256-99361698)
               

               
               26-444, gnl|Mm7|chr19 (41964026-41966583)
               


               
               484-963, gnl|bosTau2|chr26 (10500575-10500082)
               

               
               484-963, gnl|Hg17|chr10 (99362050-99362549)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               fty (0.351679)
               

               
               cki (0.330469)
               

               
               cli (0.305623)
               

               
               cga (0.279096)
               

               
               hlv (0.278513)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               cag (0.151194)
               

               
               kid (0.129735)
               

               
               bla (0.124347)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.351679)
               

               
               cki (0.330469)
               

               
               cli (0.305623)
               

               
               cga (0.279096)
               

               
               hlv (0.278513)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               cag (0.151194)
               

               
               kid (0.129735)
               

               
               bla (0.124347)

	26-444, gnl\|bosTau2\|chr26 (10501071-10500641)
	26-444, gnl\|Hg17\|chr10 (99361256-99361698)
	26-444, gnl\|Mm7\|chr19 (41964026-41966583)

	484-963, gnl\|bosTau2\|chr26 (10500575-10500082)
	484-963, gnl\|Hg17\|chr10 (99362050-99362549)

	fty (0.351679)
	cki (0.330469)
	cli (0.305623)
	cga (0.279096)
	hlv (0.278513)
	mas (0.210305)
	hea (0.204499)
	aor (0.195274)
	sin (0.174948)
	cut (0.169924)
	cag (0.151194)
	kid (0.129735)
	bla (0.124347)