Non-Coding RNA Search

Ss1.1-rdbla0131_a2.5

Sequence:


               
               ATACTGTAAATATAAAACCTAAAGATGAGTTTAGGTGGTTTCAGGAGTATAAATTCAGCT
AATTCTATATTATTTTTCAATCATCATTTATCAGGCATAGCTCTGAAATGTTGAACATCT
AACAGGTTATCTGGATTTCTGAATATTCATAATTTGTTACCTGCAGGTGAGAGTGTTGGA
AGTTTAAATTCTAGCCCTAGATTTTAGAATAAATCTCAGCACTTGACTGAAGTACCAAAA
AATGTTTCCAAAAATGATAGTTGTAAGTTATCTCAAAATGTCTTAGACTAGGTTCTCAGT
GATAAGAGAATTCAGTACAAGTACAAAGGTATATTTACTGTGCAGTGTAACTCTCACAGA
TGTATTTTCGGTTTCCAGCCCAGTAGTTAAAGTGTATGGGGTTTTTTGGGGGGTTTTTTT
TTGTTTTGTTTTGTTTTTTTGTTTTTTTTTTTTTAAATAACTGTATAGATGAATACTTTA
AAAAAAATGTAAGACACAAGTCCATGTCTTGAGAGTCTTGCGGTTAGATTCTGCATCTGA
TATGTTTGGAGTTTAAGAGCCATTGTGTTAAAAATAATATGTAGCAAGGAAAAGGTGCTT
TTTACTTTTAATCCCTTTGATCAATATGGCTTTTTTCCAAATTGGCTGATGGATCAAAAT
GAAACCTGTCAATGTGAACTCAGTTACTGAACTTGTTACTTGTTTTTGCTAGAAATGTTA
TTAATGTAATAAATATCAATGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATACTGTAAATATAAAACCTAAAGATGAGTTTAGGTGGTTTCAGGAGTATAAATTCAGCT
AATTCTATATTATTTTTCAATCATCATTTATCAGGCATAGCTCTGAAATGTTGAACATCT
AACAGGTTATCTGGATTTCTGAATATTCATAATTTGTTACCTGCAGGTGAGAGTGTTGGA
AGTTTAAATTCTAGCCCTAGATTTTAGAATAAATCTCAGCACTTGACTGAAGTACCAAAA
AATGTTTCCAAAAATGATAGTTGTAAGTTATCTCAAAATGTCTTAGACTAGGTTCTCAGT
GATAAGAGAATTCAGTACAAGTACAAAGGTATATTTACTGTGCAGTGTAACTCTCACAGA
TGTATTTTCGGTTTCCAGCCCAGTAGTTAAAGTGTATGGGGTTTTTTGGGGGGTTTTTTT
TTGTTTTGTTTTGTTTTTTTGTTTTTTTTTTTTTAAATAACTGTATAGATGAATACTTTA
AAAAAAATGTAAGACACAAGTCCATGTCTTGAGAGTCTTGCGGTTAGATTCTGCATCTGA
TATGTTTGGAGTTTAAGAGCCATTGTGTTAAAAATAATATGTAGCAAGGAAAAGGTGCTT
TTTACTTTTAATCCCTTTGATCAATATGGCTTTTTTCCAAATTGGCTGATGGATCAAAAT
GAAACCTGTCAATGTGAACTCAGTTACTGAACTTGTTACTTGTTTTTGCTAGAAATGTTA
TTAATGTAATAAATATCAATGTGG

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               3-404, gnl|bosTau2|chr12 (1652520-1652918)
               

               
               3-404, gnl|Hg17|chr10 (69772260-69772657)
               

               
               3-404, gnl|Mm7|chr10 (62534050-62533712)
               


               
               450-744, gnl|bosTau2|chr12 (1652915-1653210)
               

               
               450-744, gnl|Hg17|chr10 (69772656-69772947)
               

               
               450-744, gnl|Mm7|chr10 (62533715-62533454)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-404, gnl|bosTau2|chr12 (1652520-1652918)
               

               
               3-404, gnl|Hg17|chr10 (69772260-69772657)
               

               
               3-404, gnl|Mm7|chr10 (62534050-62533712)
               


               
               450-744, gnl|bosTau2|chr12 (1652915-1653210)
               

               
               450-744, gnl|Hg17|chr10 (69772656-69772947)
               

               
               450-744, gnl|Mm7|chr10 (62533715-62533454)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               vin (0.332557)
               

               
               lnt (0.284616)
               

               
               gul (0.177588)
               

               
               fhi (0.169578)
               

               
               ret (0.128733)
               

               
               bla (0.124347)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               lnt (0.284616)
               

               
               gul (0.177588)
               

               
               fhi (0.169578)
               

               
               ret (0.128733)
               

               
               bla (0.124347)

	3-404, gnl\|bosTau2\|chr12 (1652520-1652918)
	3-404, gnl\|Hg17\|chr10 (69772260-69772657)
	3-404, gnl\|Mm7\|chr10 (62534050-62533712)

	450-744, gnl\|bosTau2\|chr12 (1652915-1653210)
	450-744, gnl\|Hg17\|chr10 (69772656-69772947)
	450-744, gnl\|Mm7\|chr10 (62533715-62533454)

	vin (0.332557)
	lnt (0.284616)
	gul (0.177588)
	fhi (0.169578)
	ret (0.128733)
	bla (0.124347)