Non-Coding RNA Search

Ss1.1-rdbla0131_c9.5

Sequence:


               
               CCTTGCTGACCATGATGATCAGGATGTGGTGCTTTTTAACCGTGGGATGCTGCCCGCCTA
CTACGGCATTCTGAGACTCTGCTGTGAGCAGTCTCCTGCATTTACACGACAATTGGCTTC
TCACCAGAACATCCAGTGGGCCTTTAAGAATCTTACACCACATGCCAGCCAATACCCTGG
AGCAGTGGAAGAACTATTTAACCTGATGCAGCTATTCATAGCTCAGAGGCCAGATATGAG
AGAAGAAGAATTAGAAGATATTAAACAATTTAAGAAAACAACCATAAGCTGTTACTTACG
TTGCTTAGATGGCCGATCCTGCTGGACTACTTTAATAAGTGCCTTCCGAATACTTTTAGA
ATCTGATGAAGACCGACTTCTTGTGGTATTTAATCGAGGGTTGATCCTGATGACTGAGTC
TTTCAACACACTTCACATGATGTATCATGAAGCCACAGCTTGCCATGTGACTGGAGACTT
GGTAGAACTTCTGTCAATATTCCTTTCAGTTTTGTAGTCTACACGCCCATATCTTCAGAG
AAAAGATGTGAAACAAGCATTAATCCAATGGCAGGAGCGAATTGAATTTGCCCATAAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTGCTGACCATGATGATCAGGATGTGGTGCTTTTTAACCGTGGGATGCTGCCCGCCTA
CTACGGCATTCTGAGACTCTGCTGTGAGCAGTCTCCTGCATTTACACGACAATTGGCTTC
TCACCAGAACATCCAGTGGGCCTTTAAGAATCTTACACCACATGCCAGCCAATACCCTGG
AGCAGTGGAAGAACTATTTAACCTGATGCAGCTATTCATAGCTCAGAGGCCAGATATGAG
AGAAGAAGAATTAGAAGATATTAAACAATTTAAGAAAACAACCATAAGCTGTTACTTACG
TTGCTTAGATGGCCGATCCTGCTGGACTACTTTAATAAGTGCCTTCCGAATACTTTTAGA
ATCTGATGAAGACCGACTTCTTGTGGTATTTAATCGAGGGTTGATCCTGATGACTGAGTC
TTTCAACACACTTCACATGATGTATCATGAAGCCACAGCTTGCCATGTGACTGGAGACTT
GGTAGAACTTCTGTCAATATTCCTTTCAGTTTTGTAGTCTACACGCCCATATCTTCAGAG
AAAAGATGTGAAACAAGCATTAATCCAATGGCAGGAGCGAATTGAATTTGCCCATAAACT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-159, - strand, RNAz p=0.740873
               

               
               42-157, - strand, RNAz p=0.833645

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, - strand, RNAz p=0.740873
               

               
               42-157, - strand, RNAz p=0.833645

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-182, gnl|bosTau2|chr13 (58231583-58231764)
               

               
               1-182, gnl|canFam2|chr10 (64441501-64441847)
               

               
               1-182, gnl|danRer3|chr2 (13155251-13154905)
               

               
               1-182, gnl|dasNov1|scaffold_33048 (11419-11073)
               

               
               1-182, gnl|echTel1|scaffold_275946 (17948-17597)
               

               
               1-182, gnl|fr1|chrUn (185671549-185671890)
               

               
               1-182, gnl|galGal2|chr3 (217692-217332)
               

               
               1-182, gnl|hg17|chr2 (61352830-61353176)
               

               
               1-182, gnl|Hg17|chr2 (61353026-61352845)
               

               
               1-182, gnl|loxAfr1|scaffold_48856 (4095-3749)
               

               
               1-182, gnl|mm7|chr11 (23416875-23416529)
               

               
               1-182, gnl|Mm7|chr11 (23416677-23416858)
               

               
               1-182, gnl|monDom2|scaffold_1 (26094269-26094615)
               

               
               1-182, gnl|oryCun1|scaffold_189712 (4783-5129)
               

               
               1-182, gnl|panTro1|chr12 (63567845-63568191)
               

               
               1-182, gnl|rheMac2|chr13 (61397370-61397716)
               

               
               1-182, gnl|rn3|chr14 (104422547-104422201)
               

               
               1-182, gnl|tetNig1|chrUn_random (30527560-30527895)
               

               
               1-182, gnl|xenTro1|scaffold_562 (402451-402797)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-182, gnl|bosTau2|chr13 (58231583-58231764)
               

               
               1-182, gnl|canFam2|chr10 (64441501-64441847)
               

               
               1-182, gnl|danRer3|chr2 (13155251-13154905)
               

               
               1-182, gnl|dasNov1|scaffold_33048 (11419-11073)
               

               
               1-182, gnl|echTel1|scaffold_275946 (17948-17597)
               

               
               1-182, gnl|fr1|chrUn (185671549-185671890)
               

               
               1-182, gnl|galGal2|chr3 (217692-217332)
               

               
               1-182, gnl|hg17|chr2 (61352830-61353176)
               

               
               1-182, gnl|Hg17|chr2 (61353026-61352845)
               

               
               1-182, gnl|loxAfr1|scaffold_48856 (4095-3749)
               

               
               1-182, gnl|mm7|chr11 (23416875-23416529)
               

               
               1-182, gnl|Mm7|chr11 (23416677-23416858)
               

               
               1-182, gnl|monDom2|scaffold_1 (26094269-26094615)
               

               
               1-182, gnl|oryCun1|scaffold_189712 (4783-5129)
               

               
               1-182, gnl|panTro1|chr12 (63567845-63568191)
               

               
               1-182, gnl|rheMac2|chr13 (61397370-61397716)
               

               
               1-182, gnl|rn3|chr14 (104422547-104422201)
               

               
               1-182, gnl|tetNig1|chrUn_random (30527560-30527895)
               

               
               1-182, gnl|xenTro1|scaffold_562 (402451-402797)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)

	40-159, - strand, RNAz p=0.740873
	42-157, - strand, RNAz p=0.833645

	1-182, gnl\|bosTau2\|chr13 (58231583-58231764)
	1-182, gnl\|canFam2\|chr10 (64441501-64441847)
	1-182, gnl\|danRer3\|chr2 (13155251-13154905)
	1-182, gnl\|dasNov1\|scaffold_33048 (11419-11073)
	1-182, gnl\|echTel1\|scaffold_275946 (17948-17597)
	1-182, gnl\|fr1\|chrUn (185671549-185671890)
	1-182, gnl\|galGal2\|chr3 (217692-217332)
	1-182, gnl\|hg17\|chr2 (61352830-61353176)
	1-182, gnl\|Hg17\|chr2 (61353026-61352845)
	1-182, gnl\|loxAfr1\|scaffold_48856 (4095-3749)
	1-182, gnl\|mm7\|chr11 (23416875-23416529)
	1-182, gnl\|Mm7\|chr11 (23416677-23416858)
	1-182, gnl\|monDom2\|scaffold_1 (26094269-26094615)
	1-182, gnl\|oryCun1\|scaffold_189712 (4783-5129)
	1-182, gnl\|panTro1\|chr12 (63567845-63568191)
	1-182, gnl\|rheMac2\|chr13 (61397370-61397716)
	1-182, gnl\|rn3\|chr14 (104422547-104422201)
	1-182, gnl\|tetNig1\|chrUn_random (30527560-30527895)
	1-182, gnl\|xenTro1\|scaffold_562 (402451-402797)