Non-Coding RNA Search

Ss1.1-rdbla0131_n11.5

Sequence:


               
               CACTGTCTTTGTTACTAATACTTAGAAGAATTTAAAGGCAGACTCAGCGAATGCTTAAAA
ATCCTTTAAATCATGTTTTCAGGAAGTGGAGTTAATATTAGGTCACTAAAGGGTAGATAG
AGTTTTCAAAACATCACTAAAATCATGCAATTATTATACTCATCCTATGACATACACAGA
CTTTTATCATTCTGTTATTATTGGTGGGAAAATTGAAATACTTAGCATTAACTGATAAAA
GCCATAATCTATTCTTATGATAAAGCTGCTAGTATTTATTTGAACTATTTTTTATCAGAA
AGGATAAAAATGCTCTACGTGCCTATTTTGAATGTCTTCCCTTTTTAAAAAGTCATGTCA
AAGCACAAGTATTGTAAACAAATCTAGAATATATAAAAAAAATGATTGTGACAAGCTATC
TTTCATAGTAAACAATCACATATACTCTGAATTGTTATACCAGTGGTATGGAAAGGACAA
TTAAAATTTCCTTTAGCTTCCTCATTTATTTGCCAGGTACACTAACAAAACTACTCCTAG
GTGAAATATTAAAGGCCAGGAGAAGGCAAGGAATGGTGATTACTGGTTCTAAAGTACCAA
ATATCCTCTTGTTTTAAGGCAACATGGTGAAATAAAAAACTCCCATAATGTGAAAGAAAA
GTTATGGGGAAGAGGCAGCATCACTGAAAGTTTTATACCATCATCATCAGGCTAAGTCTG
ATTCAACACTAAAAGGCTGTGTGTGAATGTTTCTGTGCGTCCCTGGGAAATGTGCGTGAA
AAATAGATGTCCACTTCTGGAGTTAACTGTCTAAAAACTTCTGTTTTGTGTACAGTTACA
CCTTGGAGATACTGCAGGTTCAGTTCTAGACTGCCACAATAAAGCAAAATGTTGTAGTAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACTGTCTTTGTTACTAATACTTAGAAGAATTTAAAGGCAGACTCAGCGAATGCTTAAAA
ATCCTTTAAATCATGTTTTCAGGAAGTGGAGTTAATATTAGGTCACTAAAGGGTAGATAG
AGTTTTCAAAACATCACTAAAATCATGCAATTATTATACTCATCCTATGACATACACAGA
CTTTTATCATTCTGTTATTATTGGTGGGAAAATTGAAATACTTAGCATTAACTGATAAAA
GCCATAATCTATTCTTATGATAAAGCTGCTAGTATTTATTTGAACTATTTTTTATCAGAA
AGGATAAAAATGCTCTACGTGCCTATTTTGAATGTCTTCCCTTTTTAAAAAGTCATGTCA
AAGCACAAGTATTGTAAACAAATCTAGAATATATAAAAAAAATGATTGTGACAAGCTATC
TTTCATAGTAAACAATCACATATACTCTGAATTGTTATACCAGTGGTATGGAAAGGACAA
TTAAAATTTCCTTTAGCTTCCTCATTTATTTGCCAGGTACACTAACAAAACTACTCCTAG
GTGAAATATTAAAGGCCAGGAGAAGGCAAGGAATGGTGATTACTGGTTCTAAAGTACCAA
ATATCCTCTTGTTTTAAGGCAACATGGTGAAATAAAAAACTCCCATAATGTGAAAGAAAA
GTTATGGGGAAGAGGCAGCATCACTGAAAGTTTTATACCATCATCATCAGGCTAAGTCTG
ATTCAACACTAAAAGGCTGTGTGTGAATGTTTCTGTGCGTCCCTGGGAAATGTGCGTGAA
AAATAGATGTCCACTTCTGGAGTTAACTGTCTAAAAACTTCTGTTTTGTGTACAGTTACA
CCTTGGAGATACTGCAGGTTCAGTTCTAGACTGCCACAATAAAGCAAAATGTTGTAGTAA
AAAAAAAAAAAA

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               2-890, gnl|bosTau2|chr28 (4391382-4392253)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-890, gnl|bosTau2|chr28 (4391382-4392253)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               spc (0.340097)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.340097)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)

	spc (0.340097)
	cbe (0.239234)
	ece (0.229305)
	eye (0.170503)
	fhi (0.169578)
	kid (0.129735)
	ova (0.129132)
	sug (0.127291)
	bla (0.124347)