Ss1.1-rdbla0132_b4.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGCCAGGGCAGAGGAGGAGCATGGTGTCTATGTGTATGACCTGATGGCTACTGTGGTAC ACATCCTGGACTCACGCACAGGGGGCAGCCTGGTGGCTCACATCAAAGTTGGAGAGACCT ACCACCAGCGCAAGGAGGGCGTTACCCACCAGCAGTGGTATCTCTTCAATGACTTTCTCA TTGAACCTATTGATAAGCATGAAGCTGTGCAGTTTGACATGAATTGGAAAGTGCCTGCTA TCCTTTATTACATCAAAAGGAATCTTAATTCCAAATACAACCTGAACATCAAGAACCCTA TTGAGGCAAACGTTCTGCTGGCTGAAGCCTCACTAGCACGGAAGCAGCGGAAAACACATA CTACCTTTATTCCATTGATGCTTAATGAGATGCCACAGGTTGGGGACCTGGTGGGCCTGG ATGCTGAGTTTGTCACCCTTAATGAGGAGGAAGCGGAGCTGCGCAGCGATGGCACCAAGT CAACCATCAAGCCAAGCCAGATGTCAGTAGCAAGGATTACGTGTGTTAGGGGCCAGGGGC CCAATGAGGGTATCCCCTTCATTGATGACTACATCTCTACCCAGGAGCAGGTGGTGGATT ACTTGACTCAGTACTCGGGGATAAAGCCAGGAGACCTGGATGCCAAGATTTCCTCTAAGC ACCTCACAACTCTAAAGTCTACTTACTTAAAGCTTCGTTTTCTCATAGACATTGGCGTCA AGTTTGTGGGTCATGGTCTGCAGAAGGACTTCCGTGTCATCAACCTCATGGTGCCCAAGG ACCAGGTCCTTGACACTGTTTATCTATTTCACATGCCCCGAAAACGAATGATTTCCCTGC GATTCCTTGCTTGGTACTTTCTAGATCTGAAGATTCAAGGGGAGACCCATGACAGTATTG AGGATGCCCGCACAGCCCTTCAGCTTTACCGAAAATATCTGGAGCTAAGCAAAAATGGCA CTGAGCCTGAGTCCTTCCACAAAGTGCTGAAGGGCCTTTATGAGAAAGGCCGAAAGATGG ACTGGAAGGTGCCTGAGCCTGAGGGCCAGACAAGTCCCAAGAATGCAGCTGTCTTCTCTT CAGTGCTGGCGCTCTGACCTCACCCTTTCCCAGTGAACAGTTCTCTCTCCCTTCAATGTT CTGTGGCCCCAGAACTGGGAGATGGCTTCCCAAGTTGGCTATACCCTACTTCCAGAATTG GACCTGCTCAGGGTCTACAGATGGTGCTATTATTAATAGAACTGGAATGCAGGAGAATTG TTGCAAAGGGTCTAGGAGCCAGATTGCTTTTTCATCCTTTGCAAAATAGTGGGCCAGCAA CAGTCTAGGATTGACCCAGATGAAAAGTAATTAGTATTCTTAATAAATACATGGGTAATA AATATCCTAGGCAAAGAAGCTCCTGGAACCAAAACTCTCAGTTCCTAGTCCCAGACAATG ATAGGATACAACAGTAGTAGCTCAAGACCTAACTCAGGTCTCTGCTTCAGGGTTGCCTGG AGGGGCCAGCATTTAGTCTGGTGGCCCCAGCAAACTAGTGTTGCCAACATCACCATTGCC AAAAGGGCCTTTGGGTCCTAGACAAAGCTTGGCTGCTGGCTTCACTTCTGCCGACAGCTG AGAAGCATCTGTCTTCCATCCACTCTCCCATCCCAAGTTTTGTTTTCTTGTTATTTTTTA AAATTTTGTTTTAAACTGCATGTTTTATAAAATAAAAACGAAAAATATAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGCCAGGGCAGAGGAGGAGCATGGTGTCTATGTGTATGACCTGATGGCTACTGTGGTAC ACATCCTGGACTCACGCACAGGGGGCAGCCTGGTGGCTCACATCAAAGTTGGAGAGACCT ACCACCAGCGCAAGGAGGGCGTTACCCACCAGCAGTGGTATCTCTTCAATGACTTTCTCA TTGAACCTATTGATAAGCATGAAGCTGTGCAGTTTGACATGAATTGGAAAGTGCCTGCTA TCCTTTATTACATCAAAAGGAATCTTAATTCCAAATACAACCTGAACATCAAGAACCCTA TTGAGGCAAACGTTCTGCTGGCTGAAGCCTCACTAGCACGGAAGCAGCGGAAAACACATA CTACCTTTATTCCATTGATGCTTAATGAGATGCCACAGGTTGGGGACCTGGTGGGCCTGG ATGCTGAGTTTGTCACCCTTAATGAGGAGGAAGCGGAGCTGCGCAGCGATGGCACCAAGT CAACCATCAAGCCAAGCCAGATGTCAGTAGCAAGGATTACGTGTGTTAGGGGCCAGGGGC CCAATGAGGGTATCCCCTTCATTGATGACTACATCTCTACCCAGGAGCAGGTGGTGGATT ACTTGACTCAGTACTCGGGGATAAAGCCAGGAGACCTGGATGCCAAGATTTCCTCTAAGC ACCTCACAACTCTAAAGTCTACTTACTTAAAGCTTCGTTTTCTCATAGACATTGGCGTCA AGTTTGTGGGTCATGGTCTGCAGAAGGACTTCCGTGTCATCAACCTCATGGTGCCCAAGG ACCAGGTCCTTGACACTGTTTATCTATTTCACATGCCCCGAAAACGAATGATTTCCCTGC GATTCCTTGCTTGGTACTTTCTAGATCTGAAGATTCAAGGGGAGACCCATGACAGTATTG AGGATGCCCGCACAGCCCTTCAGCTTTACCGAAAATATCTGGAGCTAAGCAAAAATGGCA CTGAGCCTGAGTCCTTCCACAAAGTGCTGAAGGGCCTTTATGAGAAAGGCCGAAAGATGG ACTGGAAGGTGCCTGAGCCTGAGGGCCAGACAAGTCCCAAGAATGCAGCTGTCTTCTCTT CAGTGCTGGCGCTCTGACCTCACCCTTTCCCAGTGAACAGTTCTCTCTCCCTTCAATGTT CTGTGGCCCCAGAACTGGGAGATGGCTTCCCAAGTTGGCTATACCCTACTTCCAGAATTG GACCTGCTCAGGGTCTACAGATGGTGCTATTATTAATAGAACTGGAATGCAGGAGAATTG TTGCAAAGGGTCTAGGAGCCAGATTGCTTTTTCATCCTTTGCAAAATAGTGGGCCAGCAA CAGTCTAGGATTGACCCAGATGAAAAGTAATTAGTATTCTTAATAAATACATGGGTAATA AATATCCTAGGCAAAGAAGCTCCTGGAACCAAAACTCTCAGTTCCTAGTCCCAGACAATG ATAGGATACAACAGTAGTAGCTCAAGACCTAACTCAGGTCTCTGCTTCAGGGTTGCCTGG AGGGGCCAGCATTTAGTCTGGTGGCCCCAGCAAACTAGTGTTGCCAACATCACCATTGCC AAAAGGGCCTTTGGGTCCTAGACAAAGCTTGGCTGCTGGCTTCACTTCTGCCGACAGCTG AGAAGCATCTGTCTTCCATCCACTCTCCCATCCCAAGTTTTGTTTTCTTGTTATTTTTTA AAATTTTGTTTTAAACTGCATGTTTTATAAAATAAAAACGAAAAATATAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 589-1439, - strand, RNAz p=0.856243 | |
| 940-1687, + strand, RNAz p=0.994121 | |
| 1102-1217, - strand, RNAz p=0.999904 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 589-1439, - strand, RNAz p=0.856243 | |
| 940-1687, + strand, RNAz p=0.994121 | |
| 1102-1217, - strand, RNAz p=0.999904 |
| Aligned organism(s): 80 entry(ies) | More info |
| Aligned organism(s): 80 entry(ies) | Help | Less info |
| 1-138, gnl|bosTau2|chr5 (33319570-33319707) | |
| 1-138, gnl|canFam2|chr10 (3607863-3608011) | |
| 1-138, gnl|danRer3|chr23 (45393328-45393197) | |
| 1-138, gnl|dasNov1|scaffold_5330 (34155-34007) | |
| 1-138, gnl|echTel1|scaffold_297832 (6927-6779) | |
| 1-138, gnl|fr1|chrUn (230154775-230154909) | |
| 1-138, gnl|galGal2|chrUn (48293396-48293233) | |
| 1-138, gnl|hg17|chr12 (55002662-55002810) | |
| 1-138, gnl|Hg17|chr12 (55002802-55002665) | |
| 1-138, gnl|mm7|chr10 (127817160-127817012) | |
| 1-138, gnl|Mm7|chr10 (127817018-127817155) | |
| 1-138, gnl|panTro1|chr10 (56254438-56254586) | |
| 1-138, gnl|rheMac2|chr11 (53398533-53398681) | |
| 1-138, gnl|rn3|chr7 (1604518-1604370) | |
| 1-138, gnl|tetNig1|chr9 (8611337-8611471) | |
| 1-138, gnl|xenTro1|scaffold_85 (1723751-1723862) | |
| 291-447, gnl|bosTau2|chr5 (33320777-33320933) | |
| 291-447, gnl|canFam2|chr10 (3606603-3606803) | |
| 291-447, gnl|danRer3|chr23 (45395415-45395230) | |
| 291-447, gnl|dasNov1|scaffold_5330 (35621-35421) | |
| 291-447, gnl|echTel1|scaffold_310154 (268-68) | |
| 291-447, gnl|fr1|chrUn (230154261-230154448) | |
| 291-447, gnl|galGal2|chrUn (48294485-48294289) | |
| 291-447, gnl|hg17|chr12 (54999912-55000111) | |
| 291-447, gnl|Hg17|chr12 (55000070-54999914) | |
| 291-447, gnl|loxAfr1|scaffold_1805 (4205-4005) | |
| 291-447, gnl|mm7|chr10 (127819293-127819099) | |
| 291-447, gnl|Mm7|chr10 (127819133-127819289) | |
| 291-447, gnl|oryCun1|scaffold_186802 (26133-25940) | |
| 291-447, gnl|panTro1|chr10 (56250929-56251128) | |
| 291-447, gnl|rheMac2|chr11 (53394916-53395115) | |
| 291-447, gnl|rn3|chr7 (1606549-1606355) | |
| 291-447, gnl|tetNig1|chr9 (8610823-8610996) | |
| 291-447, gnl|xenTro1|scaffold_85 (1721241-1721408) | |
| 589-772, gnl|bosTau2|chr5 (33321301-33321484) | |
| 589-772, gnl|canFam2|chr10 (3606023-3606153) | |
| 589-772, gnl|danRer3|chr23 (45396095-45395981) | |
| 589-772, gnl|dasNov1|scaffold_5330 (36203-36061) | |
| 589-772, gnl|echTel1|scaffold_310154 (818-681) | |
| 589-772, gnl|fr1|chrUn (230153585-230153708) | |
| 589-772, gnl|hg17|chr12 (54999336-54999472) | |
| 589-772, gnl|Hg17|chr12 (54999540-54999357) | |
| 589-772, gnl|loxAfr1|scaffold_1805 (4781-4644) | |
| 589-772, gnl|mm7|chr10 (127819865-127819728) | |
| 589-772, gnl|Mm7|chr10 (127819658-127819841) | |
| 589-772, gnl|oryCun1|scaffold_186802 (26676-26540) | |
| 589-772, gnl|panTro1|chr10 (56250353-56250489) | |
| 589-772, gnl|rheMac2|chr11 (53394340-53394476) | |
| 589-772, gnl|rn3|chr7 (1607113-1606976) | |
| 589-772, gnl|tetNig1|chr9 (8610136-8610259) | |
| 589-772, gnl|xenTro1|scaffold_85 (1719791-1719922) | |
| 861-1062, gnl|bosTau2|chr5 (33321974-33322175) | |
| 861-1062, gnl|canFam2|chr10 (3605337-3605600) | |
| 861-1062, gnl|danRer3|chr23 (45398504-45398250) | |
| 861-1062, gnl|dasNov1|scaffold_5330 (36769-36506) | |
| 861-1062, gnl|echTel1|scaffold_310154 (2557-2299) | |
| 861-1062, gnl|fr1|chrUn (230153091-230153343) | |
| 861-1062, gnl|hg17|chr12 (54998269-54998532) | |
| 861-1062, gnl|Hg17|chr12 (54998489-54998288) | |
| 861-1062, gnl|loxAfr1|scaffold_1805 (5438-5175) | |
| 861-1062, gnl|mm7|chr10 (127821962-127821704) | |
| 861-1062, gnl|Mm7|chr10 (127821741-127821942) | |
| 861-1062, gnl|oryCun1|scaffold_186802 (27357-27094) | |
| 861-1062, gnl|panTro1|chr10 (56249286-56249549) | |
| 861-1062, gnl|rheMac2|chr11 (53393259-53393522) | |
| 861-1062, gnl|rn3|chr7 (1609146-1608891) | |
| 861-1062, gnl|tetNig1|chr9 (8609633-8609869) | |
| 861-1062, gnl|xenTro1|scaffold_85 (1718952-1719193) | |
| 1063-1728, gnl|bosTau2|chr5 (33322675-33323343) | |
| 1063-1728, gnl|canFam2|chr10 (3604296-3604828) | |
| 1063-1728, gnl|dasNov1|scaffold_5330 (37767-37291) | |
| 1063-1728, gnl|echTel1|scaffold_310154 (3597-3114) | |
| 1063-1728, gnl|hg17|chr12 (54996934-54997452) | |
| 1063-1728, gnl|Hg17|chr12 (54997694-54997008) | |
| 1063-1728, gnl|loxAfr1|scaffold_1805 (6578-5993) | |
| 1063-1728, gnl|mm7|chr10 (127822932-127822439) | |
| 1063-1728, gnl|Mm7|chr10 (127822231-127822832) | |
| 1063-1728, gnl|panTro1|chr10 (56247951-56248469) | |
| 1063-1728, gnl|rheMac2|chr11 (53391929-53392447) | |
| 1063-1728, gnl|rn3|chr7 (1610092-1609641) |
| Aligned organism(s): 80 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-138, gnl|bosTau2|chr5 (33319570-33319707) | |
| 1-138, gnl|canFam2|chr10 (3607863-3608011) | |
| 1-138, gnl|danRer3|chr23 (45393328-45393197) | |
| 1-138, gnl|dasNov1|scaffold_5330 (34155-34007) | |
| 1-138, gnl|echTel1|scaffold_297832 (6927-6779) | |
| 1-138, gnl|fr1|chrUn (230154775-230154909) | |
| 1-138, gnl|galGal2|chrUn (48293396-48293233) | |
| 1-138, gnl|hg17|chr12 (55002662-55002810) | |
| 1-138, gnl|Hg17|chr12 (55002802-55002665) | |
| 1-138, gnl|mm7|chr10 (127817160-127817012) | |
| 1-138, gnl|Mm7|chr10 (127817018-127817155) | |
| 1-138, gnl|panTro1|chr10 (56254438-56254586) | |
| 1-138, gnl|rheMac2|chr11 (53398533-53398681) | |
| 1-138, gnl|rn3|chr7 (1604518-1604370) | |
| 1-138, gnl|tetNig1|chr9 (8611337-8611471) | |
| 1-138, gnl|xenTro1|scaffold_85 (1723751-1723862) | |
| 291-447, gnl|bosTau2|chr5 (33320777-33320933) | |
| 291-447, gnl|canFam2|chr10 (3606603-3606803) | |
| 291-447, gnl|danRer3|chr23 (45395415-45395230) | |
| 291-447, gnl|dasNov1|scaffold_5330 (35621-35421) | |
| 291-447, gnl|echTel1|scaffold_310154 (268-68) | |
| 291-447, gnl|fr1|chrUn (230154261-230154448) | |
| 291-447, gnl|galGal2|chrUn (48294485-48294289) | |
| 291-447, gnl|hg17|chr12 (54999912-55000111) | |
| 291-447, gnl|Hg17|chr12 (55000070-54999914) | |
| 291-447, gnl|loxAfr1|scaffold_1805 (4205-4005) | |
| 291-447, gnl|mm7|chr10 (127819293-127819099) | |
| 291-447, gnl|Mm7|chr10 (127819133-127819289) | |
| 291-447, gnl|oryCun1|scaffold_186802 (26133-25940) | |
| 291-447, gnl|panTro1|chr10 (56250929-56251128) | |
| 291-447, gnl|rheMac2|chr11 (53394916-53395115) | |
| 291-447, gnl|rn3|chr7 (1606549-1606355) | |
| 291-447, gnl|tetNig1|chr9 (8610823-8610996) | |
| 291-447, gnl|xenTro1|scaffold_85 (1721241-1721408) | |
| 589-772, gnl|bosTau2|chr5 (33321301-33321484) | |
| 589-772, gnl|canFam2|chr10 (3606023-3606153) | |
| 589-772, gnl|danRer3|chr23 (45396095-45395981) | |
| 589-772, gnl|dasNov1|scaffold_5330 (36203-36061) | |
| 589-772, gnl|echTel1|scaffold_310154 (818-681) | |
| 589-772, gnl|fr1|chrUn (230153585-230153708) | |
| 589-772, gnl|hg17|chr12 (54999336-54999472) | |
| 589-772, gnl|Hg17|chr12 (54999540-54999357) | |
| 589-772, gnl|loxAfr1|scaffold_1805 (4781-4644) | |
| 589-772, gnl|mm7|chr10 (127819865-127819728) | |
| 589-772, gnl|Mm7|chr10 (127819658-127819841) | |
| 589-772, gnl|oryCun1|scaffold_186802 (26676-26540) | |
| 589-772, gnl|panTro1|chr10 (56250353-56250489) | |
| 589-772, gnl|rheMac2|chr11 (53394340-53394476) | |
| 589-772, gnl|rn3|chr7 (1607113-1606976) | |
| 589-772, gnl|tetNig1|chr9 (8610136-8610259) | |
| 589-772, gnl|xenTro1|scaffold_85 (1719791-1719922) | |
| 861-1062, gnl|bosTau2|chr5 (33321974-33322175) | |
| 861-1062, gnl|canFam2|chr10 (3605337-3605600) | |
| 861-1062, gnl|danRer3|chr23 (45398504-45398250) | |
| 861-1062, gnl|dasNov1|scaffold_5330 (36769-36506) | |
| 861-1062, gnl|echTel1|scaffold_310154 (2557-2299) | |
| 861-1062, gnl|fr1|chrUn (230153091-230153343) | |
| 861-1062, gnl|hg17|chr12 (54998269-54998532) | |
| 861-1062, gnl|Hg17|chr12 (54998489-54998288) | |
| 861-1062, gnl|loxAfr1|scaffold_1805 (5438-5175) | |
| 861-1062, gnl|mm7|chr10 (127821962-127821704) | |
| 861-1062, gnl|Mm7|chr10 (127821741-127821942) | |
| 861-1062, gnl|oryCun1|scaffold_186802 (27357-27094) | |
| 861-1062, gnl|panTro1|chr10 (56249286-56249549) | |
| 861-1062, gnl|rheMac2|chr11 (53393259-53393522) | |
| 861-1062, gnl|rn3|chr7 (1609146-1608891) | |
| 861-1062, gnl|tetNig1|chr9 (8609633-8609869) | |
| 861-1062, gnl|xenTro1|scaffold_85 (1718952-1719193) | |
| 1063-1728, gnl|bosTau2|chr5 (33322675-33323343) | |
| 1063-1728, gnl|canFam2|chr10 (3604296-3604828) | |
| 1063-1728, gnl|dasNov1|scaffold_5330 (37767-37291) | |
| 1063-1728, gnl|echTel1|scaffold_310154 (3597-3114) | |
| 1063-1728, gnl|hg17|chr12 (54996934-54997452) | |
| 1063-1728, gnl|Hg17|chr12 (54997694-54997008) | |
| 1063-1728, gnl|loxAfr1|scaffold_1805 (6578-5993) | |
| 1063-1728, gnl|mm7|chr10 (127822932-127822439) | |
| 1063-1728, gnl|Mm7|chr10 (127822231-127822832) | |
| 1063-1728, gnl|panTro1|chr10 (56247951-56248469) | |
| 1063-1728, gnl|rheMac2|chr11 (53391929-53392447) | |
| 1063-1728, gnl|rn3|chr7 (1610092-1609641) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| cga (0.279096) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| fty (0.17584) | |
| eye (0.170503) | |
| cje (0.165235) | |
| lun (0.150489) | |
| spl (0.143184) | |
| csk (0.140746) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| ste (0.135208) | |
| pla (0.133672) | |
| bla (0.124347) | |
| med (0.116252) | |
| jca (0.11396) | |
| spc (0.113366) | |
| cty (0.10408) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cga (0.279096) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| fty (0.17584) | |
| eye (0.170503) | |
| cje (0.165235) | |
| lun (0.150489) | |
| spl (0.143184) | |
| csk (0.140746) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| ste (0.135208) | |
| pla (0.133672) | |
| bla (0.124347) | |
| med (0.116252) | |
| jca (0.11396) | |
| spc (0.113366) | |
| cty (0.10408) |