Ss1.1-rdbla0132_p4.5.5
|
TGACTGCAGTTGTGCAGCAGAGGAGACTGCAGACTTCGGTTGAGGAAACATATTTCATGT
CTCAGGGGGTAGATTTTTGCAGTTACAGCTTTTCTGTTGGTATGCATAATTGATAATTGC
ATCTGGAGGGCAGATCGTGACAAGAGATGGACGGTCAGAAGAAAAATTGGAAGGACAAGG
TTGTTGACCTCCTCTACTGGAGAGACATTAAGAAGACTGGAGTGGTGTTTGGTGCCAGCT
TATTCCTGCTGCTTTCGTTGACAGTATTCAGCATTGTGAGTGTAACGGCCTACATTGCCT
TGGCCCTGCTCTCTGTGACTATCAGCTTTAGGATATATAAGGGTGTGATCCAAGCTATCC
AGAAATCTGATGAAGGCCACCCATTCAGAGCATATTTGGAATCTGAAGTTGCTATATCTG
AGGAGTTGGTTCAGAAGTACAGTAATTCTGCTCTTGGTCATGTGAACTGCACAATAAAAG
AACTTAGACGCCTCTTCTTAGTTGATGATTTAGTTGATTCTCTGAAGTTTGCAGTGTTGA
TGTGGGTATTTACCTATGTTGGTGCCTTGTTCAATGGTCTGACACTACTGATTTTGGCTC
TGATTTCACTCTTCAGTGTTCCCGTTATTTATGAACGGCATCAGGCACAGATTGATCATT
ATCTAGGACTTGCAAATAAGAATGTTAAAGATGCTATGGCTAAAATCCAAGCGAAAATCC
CTGGATTGAAGCGAAAAACTGAATGAAAAAGTCTGAAATACTTGTTTATCTAGAGGGGAT
GTTCATTTGATTCCATGGGGGAGGGTCAGGGAAGAATGAAACCTTGACATTGCAGTGCAG
TTTCACAGATCTTTATTTTTAGCAGTGCAGTGTCTGAGGAAAAATGACCTGTCTTGACTG
CCATGTGTTCATCATCTTAAGTATCGTAAGCTGCTATGTATGGATTTAAACCGTAATCAT
TTTTGTTTTTCCTATATGAGGCACTGGTGAATAAAAAAAGATCTGAGAAAGCTGTATATT
ACACTTTGTTGCAGGTAGTCTTGCTGTATTTTGGGAATTGCAGAGAACGTGGAGCTGAAA
AAATAACCCTTTTCACAGTTTGTGCACTGTGTATGGTCTGTGTAGATTGATGCAGATTTT
CTGAAATGAAATGTTTAGACGAGATCATACCACCAAAGCAGGTATGAAAGAGCTTGCCTT
TCTGGTATGTTCTAGGTGTATTGTGAATTTTACTGTTATATTAATTGCCAATATAAGTAA
ATATAGATTATATATATATATCTCTATATATAGTGTTTCACAAAGCTTAGATCTTCTCCT
TCCCGCTGCCCCACAGTGCTTGATATTTCAGTCATTGGTTTTATGTGTGTAGTTCCAAAG
CACATAAGCTAGAAAAAGGACATATATTTCCAGGAGCAGTACCATCTGTTTTAAACATGA
AACGACGCCATGCAAATAGAACTCCTCAACATAGACTTCATCGCACAGACTTAACTGTAG
TTAACTTTGTCACAAACTCTGGACTGAATCTAATGCTTCCGAAAATGTTGTTTGCAAATA
TCAAACATTGTTATGCAAGAAACTATAAAATGATTTATACAATTGTGGTTTAAGCTGTAT
TGAACTAAATCTGTGGAATGCATTGTGAACTGTAAAAGCAAAGTACCAATAAAGCTTATA
GACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTATACAC |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TGACTGCAGTTGTGCAGCAGAGGAGACTGCAGACTTCGGTTGAGGAAACATATTTCATGT
CTCAGGGGGTAGATTTTTGCAGTTACAGCTTTTCTGTTGGTATGCATAATTGATAATTGC
ATCTGGAGGGCAGATCGTGACAAGAGATGGACGGTCAGAAGAAAAATTGGAAGGACAAGG
TTGTTGACCTCCTCTACTGGAGAGACATTAAGAAGACTGGAGTGGTGTTTGGTGCCAGCT
TATTCCTGCTGCTTTCGTTGACAGTATTCAGCATTGTGAGTGTAACGGCCTACATTGCCT
TGGCCCTGCTCTCTGTGACTATCAGCTTTAGGATATATAAGGGTGTGATCCAAGCTATCC
AGAAATCTGATGAAGGCCACCCATTCAGAGCATATTTGGAATCTGAAGTTGCTATATCTG
AGGAGTTGGTTCAGAAGTACAGTAATTCTGCTCTTGGTCATGTGAACTGCACAATAAAAG
AACTTAGACGCCTCTTCTTAGTTGATGATTTAGTTGATTCTCTGAAGTTTGCAGTGTTGA
TGTGGGTATTTACCTATGTTGGTGCCTTGTTCAATGGTCTGACACTACTGATTTTGGCTC
TGATTTCACTCTTCAGTGTTCCCGTTATTTATGAACGGCATCAGGCACAGATTGATCATT
ATCTAGGACTTGCAAATAAGAATGTTAAAGATGCTATGGCTAAAATCCAAGCGAAAATCC
CTGGATTGAAGCGAAAAACTGAATGAAAAAGTCTGAAATACTTGTTTATCTAGAGGGGAT
GTTCATTTGATTCCATGGGGGAGGGTCAGGGAAGAATGAAACCTTGACATTGCAGTGCAG
TTTCACAGATCTTTATTTTTAGCAGTGCAGTGTCTGAGGAAAAATGACCTGTCTTGACTG
CCATGTGTTCATCATCTTAAGTATCGTAAGCTGCTATGTATGGATTTAAACCGTAATCAT
TTTTGTTTTTCCTATATGAGGCACTGGTGAATAAAAAAAGATCTGAGAAAGCTGTATATT
ACACTTTGTTGCAGGTAGTCTTGCTGTATTTTGGGAATTGCAGAGAACGTGGAGCTGAAA
AAATAACCCTTTTCACAGTTTGTGCACTGTGTATGGTCTGTGTAGATTGATGCAGATTTT
CTGAAATGAAATGTTTAGACGAGATCATACCACCAAAGCAGGTATGAAAGAGCTTGCCTT
TCTGGTATGTTCTAGGTGTATTGTGAATTTTACTGTTATATTAATTGCCAATATAAGTAA
ATATAGATTATATATATATATCTCTATATATAGTGTTTCACAAAGCTTAGATCTTCTCCT
TCCCGCTGCCCCACAGTGCTTGATATTTCAGTCATTGGTTTTATGTGTGTAGTTCCAAAG
CACATAAGCTAGAAAAAGGACATATATTTCCAGGAGCAGTACCATCTGTTTTAAACATGA
AACGACGCCATGCAAATAGAACTCCTCAACATAGACTTCATCGCACAGACTTAACTGTAG
TTAACTTTGTCACAAACTCTGGACTGAATCTAATGCTTCCGAAAATGTTGTTTGCAAATA
TCAAACATTGTTATGCAAGAAACTATAAAATGATTTATACAATTGTGGTTTAAGCTGTAT
TGAACTAAATCTGTGGAATGCATTGTGAACTGTAAAAGCAAAGTACCAATAAAGCTTATA
GACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTATACAC |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
180-388, gnl|bosTau2|chr11 (27883560-27883352) |
|
180-388, gnl|canFam2|chr10 (59046846-59047093) |
|
180-388, gnl|danRer3|chr13 (32479523-32479767) |
|
180-388, gnl|dasNov1|scaffold_113597 (411-168) |
|
180-388, gnl|echTel1|scaffold_288647 (46274-46515) |
|
180-388, gnl|fr1|chrUn (272631592-272631820) |
|
180-388, gnl|galGal2|chr3 (2458633-2458391) |
|
180-388, gnl|hg17|chr2 (55126274-55126518) |
|
180-388, gnl|Hg17|chr2 (55126486-55126278) |
|
180-388, gnl|loxAfr1|scaffold_5382 (79939-79692) |
|
180-388, gnl|mm7|chr11 (29685852-29685607) |
|
180-388, gnl|Mm7|chr11 (29685638-29685846) |
|
180-388, gnl|monDom2|scaffold_1 (17841969-17842215) |
|
180-388, gnl|oryCun1|scaffold_191898 (6732-6979) |
|
180-388, gnl|panTro1|chr12 (57253974-57254218) |
|
180-388, gnl|rheMac2|chr13 (55280248-55280492) |
|
180-388, gnl|rn3|chr14 (110791822-110791580) |
|
180-388, gnl|tetNig1|chr17 (7663870-7663656) |
|
180-388, gnl|xenTro1|scaffold_234 (856030-855786) |
| |
|
701-1689, gnl|bosTau2|chr11 (27867910-27866914) |
|
701-1689, gnl|Hg17|chr2 (55111988-55110976) |
|
701-1689, gnl|Mm7|chr11 (29693990-29694925) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
180-388, gnl|bosTau2|chr11 (27883560-27883352) |
|
180-388, gnl|canFam2|chr10 (59046846-59047093) |
|
180-388, gnl|danRer3|chr13 (32479523-32479767) |
|
180-388, gnl|dasNov1|scaffold_113597 (411-168) |
|
180-388, gnl|echTel1|scaffold_288647 (46274-46515) |
|
180-388, gnl|fr1|chrUn (272631592-272631820) |
|
180-388, gnl|galGal2|chr3 (2458633-2458391) |
|
180-388, gnl|hg17|chr2 (55126274-55126518) |
|
180-388, gnl|Hg17|chr2 (55126486-55126278) |
|
180-388, gnl|loxAfr1|scaffold_5382 (79939-79692) |
|
180-388, gnl|mm7|chr11 (29685852-29685607) |
|
180-388, gnl|Mm7|chr11 (29685638-29685846) |
|
180-388, gnl|monDom2|scaffold_1 (17841969-17842215) |
|
180-388, gnl|oryCun1|scaffold_191898 (6732-6979) |
|
180-388, gnl|panTro1|chr12 (57253974-57254218) |
|
180-388, gnl|rheMac2|chr13 (55280248-55280492) |
|
180-388, gnl|rn3|chr14 (110791822-110791580) |
|
180-388, gnl|tetNig1|chr17 (7663870-7663656) |
|
180-388, gnl|xenTro1|scaffold_234 (856030-855786) |
| |
|
701-1689, gnl|bosTau2|chr11 (27867910-27866914) |
|
701-1689, gnl|Hg17|chr2 (55111988-55110976) |
|
701-1689, gnl|Mm7|chr11 (29693990-29694925) |
|
isp (8.1203) |
|
tbr (6.47549) |
|
bfe (6.14416) |
|
fco (5.65949) |
|
vin (3.99069) |
|
ldo (3.5891) |
|
ste (3.38021) |
|
ret (3.34706) |
|
spc (2.49405) |
|
mga (2.40308) |
|
mgp (2.07612) |
|
pro (2.04813) |
|
aor (1.95274) |
|
sme (1.83262) |
|
kid (1.81629) |
|
nms (1.71086) |
|
sag (1.64444) |
|
bla (1.61651) |
|
liv (1.60913) |
|
tra (1.6002) |
|
ski (1.46735) |
|
gul (1.42071) |
|
ssp (1.3552) |
|
fat (1.32685) |
|
mas (1.26183) |
|
lyg (1.06482) |
|
ova (1.03306) |
|
lin (1.01922) |
|
sug (1.01833) |
|
fbs (0.876732) |
|
ece (0.687916) |
|
ecc (0.575175) |
|
mgm (0.541028) |
|
cbe (0.478469) |
|
jca (0.45584) |
|
lun (0.451467) |
|
hyp (0.42851) |
|
eje (0.395335) |
|
eru (0.360144) |
|
clu (0.358938) |
|
pgl (0.35545) |
|
rec (0.346141) |
|
mcp (0.341297) |
|
eye (0.341006) |
|
fhi (0.339155) |
|
pty (0.285429) |
|
nlu (0.191681) |
|
nep (0.183925) |
|
sin (0.174948) |
|
nje (0.16592) |
|
csp (0.161186) |
|
ctl (0.153069) |
|
spl (0.143184) |
|
nca (0.136874) |
|
nmm (0.132802) |
|
thg (0.126791) |
|
ese (0.126502) |
|
ebs (0.118301) |
|
cty (0.10408) |
|
isp (8.1203) |
|
tbr (6.47549) |
|
bfe (6.14416) |
|
fco (5.65949) |
|
vin (3.99069) |
|
ldo (3.5891) |
|
ste (3.38021) |
|
ret (3.34706) |
|
spc (2.49405) |
|
mga (2.40308) |
|
mgp (2.07612) |
|
pro (2.04813) |
|
aor (1.95274) |
|
sme (1.83262) |
|
kid (1.81629) |
|
nms (1.71086) |
|
sag (1.64444) |
|
bla (1.61651) |
|
liv (1.60913) |
|
tra (1.6002) |
|
ski (1.46735) |
|
gul (1.42071) |
|
ssp (1.3552) |
|
fat (1.32685) |
|
mas (1.26183) |
|
lyg (1.06482) |
|
ova (1.03306) |
|
lin (1.01922) |
|
sug (1.01833) |
|
fbs (0.876732) |
|
ece (0.687916) |
|
ecc (0.575175) |
|
mgm (0.541028) |
|
cbe (0.478469) |
|
jca (0.45584) |
|
lun (0.451467) |
|
hyp (0.42851) |
|
eje (0.395335) |
|
eru (0.360144) |
|
clu (0.358938) |
|
pgl (0.35545) |
|
rec (0.346141) |
|
mcp (0.341297) |
|
eye (0.341006) |
|
fhi (0.339155) |
|
pty (0.285429) |
|
nlu (0.191681) |
|
nep (0.183925) |
|
sin (0.174948) |
|
nje (0.16592) |
|
csp (0.161186) |
|
ctl (0.153069) |
|
spl (0.143184) |
|
nca (0.136874) |
|
nmm (0.132802) |
|
thg (0.126791) |
|
ese (0.126502) |
|
ebs (0.118301) |
|
cty (0.10408) |
