Non-Coding RNA Search

Ss1.1-rdbla0133_a3.5

Sequence:


               
               GTTAACTGGTCAGAGTTTTTCTTTTTTAATCCGTAAAAGGGGGATTTAAAAATCAAATAT
TTTAGGTTTGTCTCTTCCCACCTCCCCTCCCAACCTCCCCTCAGGAAGGGCTTTCTGGAT
ACCTAGTAGGCGAGAACTTACCTGGCTCGGTTTCTGTTTCAGGACAGGGATGGGCAGGAA
AGAGAGGTGTGTGTCCCAGGTTCTGGCGCATCTGAGGGAGGGATTAAGTCCAGCACGGAT
TGCTTTTTCTTATCTGACTGAGAATTCTTCTGTAAAGATCATTGGGGGGGTGGGTGCTTT
TAGGGGTGTGTCTGTGTGTGAATGTTTTTGTTTGTTTTTGTTTTTTACAGTGGCTGTCTA
AAGTATTTTTTACAATACGTTTAATCACCAGTGCTTTAAAAAGCGGTGGTACCCTATAGA
GTGGGAATTGAGGTGCCAGAGCGTTGGGTGGGAAGCTTAGGTCGTGTCATGTTGCAGTGT
TTCACCGCATGAAAGTGACATCTGGCCTACAGGACGCCCTGGAGGGGTTGGCAGAGCCCC
GGCGGGGGCAGGACCCGCACCACCACCAGGAAGACGGGACCCCCATCACAGCTGGGCCGG
CCTGCGTTTTCATTTCAAAGGGGATACAGTATTTTTTTAACAAGGAGCCATACTTTTTTT
TAAAAGTTTGAGATCTGAATGTGATTTCTAATTGTATCAGACGTTAATGTTTTAAAGCTA
TAACAAAGGTTAAAATTTCTACTTTTTTTTTCATTTAACTGTTCTTTTATTAAATTGTTG
TATGTGGATGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTAACTGGTCAGAGTTTTTCTTTTTTAATCCGTAAAAGGGGGATTTAAAAATCAAATAT
TTTAGGTTTGTCTCTTCCCACCTCCCCTCCCAACCTCCCCTCAGGAAGGGCTTTCTGGAT
ACCTAGTAGGCGAGAACTTACCTGGCTCGGTTTCTGTTTCAGGACAGGGATGGGCAGGAA
AGAGAGGTGTGTGTCCCAGGTTCTGGCGCATCTGAGGGAGGGATTAAGTCCAGCACGGAT
TGCTTTTTCTTATCTGACTGAGAATTCTTCTGTAAAGATCATTGGGGGGGTGGGTGCTTT
TAGGGGTGTGTCTGTGTGTGAATGTTTTTGTTTGTTTTTGTTTTTTACAGTGGCTGTCTA
AAGTATTTTTTACAATACGTTTAATCACCAGTGCTTTAAAAAGCGGTGGTACCCTATAGA
GTGGGAATTGAGGTGCCAGAGCGTTGGGTGGGAAGCTTAGGTCGTGTCATGTTGCAGTGT
TTCACCGCATGAAAGTGACATCTGGCCTACAGGACGCCCTGGAGGGGTTGGCAGAGCCCC
GGCGGGGGCAGGACCCGCACCACCACCAGGAAGACGGGACCCCCATCACAGCTGGGCCGG
CCTGCGTTTTCATTTCAAAGGGGATACAGTATTTTTTTAACAAGGAGCCATACTTTTTTT
TAAAAGTTTGAGATCTGAATGTGATTTCTAATTGTATCAGACGTTAATGTTTTAAAGCTA
TAACAAAGGTTAAAATTTCTACTTTTTTTTTCATTTAACTGTTCTTTTATTAAATTGTTG
TATGTGGATGGG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               204-792, gnl|bosTau2|chr25 (37474459-37473867)
               

               
               204-792, gnl|Hg17|chr7 (4583626-4584246)
               

               
               204-792, gnl|Mm7|chr5 (141439101-141439643)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               204-792, gnl|bosTau2|chr25 (37474459-37473867)
               

               
               204-792, gnl|Hg17|chr7 (4583626-4584246)
               

               
               204-792, gnl|Mm7|chr5 (141439101-141439643)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               sag (0.182715)
               

               
               fty (0.17584)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               bla (0.124347)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               bla (0.124347)

	204-792, gnl\|bosTau2\|chr25 (37474459-37473867)
	204-792, gnl\|Hg17\|chr7 (4583626-4584246)
	204-792, gnl\|Mm7\|chr5 (141439101-141439643)

	sag (0.182715)
	fty (0.17584)
	mga (0.160205)
	ski (0.146735)
	hyp (0.142837)
	cov (0.132153)
	kid (0.129735)
	bla (0.124347)