Non-Coding RNA Search

Ss1.1-rdbla0133_k23.5

Sequence:


               
               CTACCCTCTGTGTCATCTGCCAAGACAGAAGTTCCTTACGCCAAACAATTGTCCGCTTAG
AGCTGGAGGATGAGTGGCAGTTCCGCCTCCGGGACGAGTTTCAAACCGCTAACAGCAATG
ACGACAAGCCCCTCTACTTTCTTACTGGACGTCACGTATGAGCTTTTGAAGAGACCAAAA
CTAGCAAAGGGATGCCTAGGTGGGGTGGGGCACAATTATTTGAGATTTTTTTTCCTTTAA
AGTACAATCACTGTGGAGCAAAGTGCAACATATTTGTCTATTCTCCAAAGAACCCCTCAC
ATCTGACCCAGGTCTTTGGGGGCATCACTCTCCTTCAGTTCCAATTTCAGGACCTTAAAT
TCAGGTTAACTCCACCCAGGTAGTTATGCAATTATGTAAGCCAGGGTCTGCCCATGGGAG
CCTGAGGAGATGCTTTGGAGAAACAACATGGAGTCTGAATTATTTTTTCTACTACGCTAG
GTTGGGGGAAACTGACTCGGCATTAGCCAGCCTGAATGTGTTACATGAGACTCACGCCGT
TGGTGTGGATTCATTGAAGATTAACGTTTGAGGCCAGAACCCTCAGTTTCTCTTCAGATC
TGTACTTTGGTACAGTATTACTCAGGGGTCTGAAAATGATAGAATGTAGAAGATACTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTACCCTCTGTGTCATCTGCCAAGACAGAAGTTCCTTACGCCAAACAATTGTCCGCTTAG
AGCTGGAGGATGAGTGGCAGTTCCGCCTCCGGGACGAGTTTCAAACCGCTAACAGCAATG
ACGACAAGCCCCTCTACTTTCTTACTGGACGTCACGTATGAGCTTTTGAAGAGACCAAAA
CTAGCAAAGGGATGCCTAGGTGGGGTGGGGCACAATTATTTGAGATTTTTTTTCCTTTAA
AGTACAATCACTGTGGAGCAAAGTGCAACATATTTGTCTATTCTCCAAAGAACCCCTCAC
ATCTGACCCAGGTCTTTGGGGGCATCACTCTCCTTCAGTTCCAATTTCAGGACCTTAAAT
TCAGGTTAACTCCACCCAGGTAGTTATGCAATTATGTAAGCCAGGGTCTGCCCATGGGAG
CCTGAGGAGATGCTTTGGAGAAACAACATGGAGTCTGAATTATTTTTTCTACTACGCTAG
GTTGGGGGAAACTGACTCGGCATTAGCCAGCCTGAATGTGTTACATGAGACTCACGCCGT
TGGTGTGGATTCATTGAAGATTAACGTTTGAGGCCAGAACCCTCAGTTTCTCTTCAGATC
TGTACTTTGGTACAGTATTACTCAGGGGTCTGAAAATGATAGAATGTAGAAGATACTTGT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               233-341, - strand, RNAz p=0.760597
               

               
               532-660, + strand, RNAz p=0.978264

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               233-341, - strand, RNAz p=0.760597
               

               
               532-660, + strand, RNAz p=0.978264

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-660, gnl|bosTau2|chr24 (25017972-25017288)
               

               
               1-660, gnl|Hg17|chr18 (17356620-17357291)
               

               
               1-660, gnl|Mm7|chr18 (10766873-10767533)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-660, gnl|bosTau2|chr24 (25017972-25017288)
               

               
               1-660, gnl|Hg17|chr18 (17356620-17357291)
               

               
               1-660, gnl|Mm7|chr18 (10766873-10767533)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               bla (0.497389)
               

               
               cte (0.29274)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.497389)
               

               
               cte (0.29274)

	233-341, - strand, RNAz p=0.760597
	532-660, + strand, RNAz p=0.978264

	1-660, gnl\|bosTau2\|chr24 (25017972-25017288)
	1-660, gnl\|Hg17\|chr18 (17356620-17357291)
	1-660, gnl\|Mm7\|chr18 (10766873-10767533)