Non-Coding RNA Search

Ss1.1-rdbla0133_o22.5

Sequence:


               
               CTTGTCCTGGCGATATATACACAACACGCATGCATGCTGTCCTCCATTTCCGGGCCTTCA
GGTCCCCGGGGGCAGCCCGTTCCTCTCTGGACTCATTTATAAAAAACAAAATACCTACAT
CTTTGGCAAATAATGTCAGTTGCCTGTAGGTTGTGTGTTTGTAGCCTTCATGAGCGGTTA
CTTTCTGTATACACCAAGGAAGCATCTGGCAGGTTCTGCAGCGTGATTTTAGAGAGTCAG
AGTCTTCAGGAGGTATTTATTTCTATTGGAAGATGGGACTTTACCCAAAGAAAAGGGGCC
TCAGCCTTGCTCAAAGACACATTTTGTGGTAGATGGTTAAAAAAAAAAATCTTTTGAAGA
GAATTTGACACTCCAGCTGGTAGTTCTCCATTCAGCATTTTAAAACCCGTTCAGGTTATA
TCTTCCTATAAAGAGTTGGTTTCTATGTTTACAAGAAACGGTAGGTTGCGTTAGATGATC
TGTTTTAGGGACTTCCGTGACGGCCTCTTTTCCTGAGATGGAGAACTGGGAGGTAATCCA
CTTGCTCAGTGTGGAATCAAACTGTGGGTTCTCAGTAGCTCAAGAAGCCATGTACTGTAT
AGTGTTTTTCTCAGAGTATCAACTCATGTTTCTCAGATGCTTTTCTTTTTTTAATGGTGA
GGGAAAGGTCTAACTGGGGATTCCACAGTGCCTTGCATACAGTAGGCGCCCAATAAATAT
TTGTTGAAGCAAACCAAGTTTCCCAAGTCCTTGTCTCTTGCAGCGACCAAGACCATCCTT
CTCCGAAGGGCTTGGCAGTTGTGGCTAAAAAAATTAGCAGTATCATTATTTGCTTGAAAT
CATATACACTCTTTGTATGAATTTTGGTATGTTGCCAAGACATGATCTTTTTCTTATTGT
ATTTTCTGTAAATATTTCTGGCACTGAACTGTAAAGTAAAGGCAAACTGTAAATATGAAG
GTGTCCCACGTGCCCTCGCCTCCTGTGTTTCCTCTTGTCGGTTAGGGAAGAAGGCCCAGA
GGCTCGTTTGTATTTATGCAGATCCTTTGTCCAGAAGAAACCCATGGAATATTGAATGTA
ATACATTTAGCCAATTAAATTTTAAGGAGATTCTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGTCCTGGCGATATATACACAACACGCATGCATGCTGTCCTCCATTTCCGGGCCTTCA
GGTCCCCGGGGGCAGCCCGTTCCTCTCTGGACTCATTTATAAAAAACAAAATACCTACAT
CTTTGGCAAATAATGTCAGTTGCCTGTAGGTTGTGTGTTTGTAGCCTTCATGAGCGGTTA
CTTTCTGTATACACCAAGGAAGCATCTGGCAGGTTCTGCAGCGTGATTTTAGAGAGTCAG
AGTCTTCAGGAGGTATTTATTTCTATTGGAAGATGGGACTTTACCCAAAGAAAAGGGGCC
TCAGCCTTGCTCAAAGACACATTTTGTGGTAGATGGTTAAAAAAAAAAATCTTTTGAAGA
GAATTTGACACTCCAGCTGGTAGTTCTCCATTCAGCATTTTAAAACCCGTTCAGGTTATA
TCTTCCTATAAAGAGTTGGTTTCTATGTTTACAAGAAACGGTAGGTTGCGTTAGATGATC
TGTTTTAGGGACTTCCGTGACGGCCTCTTTTCCTGAGATGGAGAACTGGGAGGTAATCCA
CTTGCTCAGTGTGGAATCAAACTGTGGGTTCTCAGTAGCTCAAGAAGCCATGTACTGTAT
AGTGTTTTTCTCAGAGTATCAACTCATGTTTCTCAGATGCTTTTCTTTTTTTAATGGTGA
GGGAAAGGTCTAACTGGGGATTCCACAGTGCCTTGCATACAGTAGGCGCCCAATAAATAT
TTGTTGAAGCAAACCAAGTTTCCCAAGTCCTTGTCTCTTGCAGCGACCAAGACCATCCTT
CTCCGAAGGGCTTGGCAGTTGTGGCTAAAAAAATTAGCAGTATCATTATTTGCTTGAAAT
CATATACACTCTTTGTATGAATTTTGGTATGTTGCCAAGACATGATCTTTTTCTTATTGT
ATTTTCTGTAAATATTTCTGGCACTGAACTGTAAAGTAAAGGCAAACTGTAAATATGAAG
GTGTCCCACGTGCCCTCGCCTCCTGTGTTTCCTCTTGTCGGTTAGGGAAGAAGGCCCAGA
GGCTCGTTTGTATTTATGCAGATCCTTTGTCCAGAAGAAACCCATGGAATATTGAATGTA
ATACATTTAGCCAATTAAATTTTAAGGAGATTCTTA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               5-1116, gnl|bosTau2|chr13 (49692194-49693294)
               

               
               5-1116, gnl|Hg17|chr20 (36639769-36640910)
               

               
               5-1116, gnl|Mm7|chr2 (158239123-158240135)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-1116, gnl|bosTau2|chr13 (49692194-49693294)
               

               
               5-1116, gnl|Hg17|chr20 (36639769-36640910)
               

               
               5-1116, gnl|Mm7|chr2 (158239123-158240135)

Expressed library(ies): 19 entry(ies)

More info

Expressed library(ies): 19 entry(ies)

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               bla (0.373042)
               

               
               spl (0.286369)
               

               
               csk (0.281492)
               

               
               lyg (0.266205)
               

               
               ova (0.258264)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.373042)
               

               
               spl (0.286369)
               

               
               csk (0.281492)
               

               
               lyg (0.266205)
               

               
               ova (0.258264)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	5-1116, gnl\|bosTau2\|chr13 (49692194-49693294)
	5-1116, gnl\|Hg17\|chr20 (36639769-36640910)
	5-1116, gnl\|Mm7\|chr2 (158239123-158240135)

	bla (0.373042)
	spl (0.286369)
	csk (0.281492)
	lyg (0.266205)
	ova (0.258264)
	hea (0.204499)
	fcc (0.197785)
	cmu (0.186393)
	sin (0.174948)
	eye (0.170503)
	cut (0.169924)
	cki (0.165235)
	fco (0.157208)
	eli (0.151814)
	liv (0.146284)
	lin (0.145603)
	ste (0.135208)
	spc (0.113366)
	ldo (0.0970026)