Non-Coding RNA Search

Ss1.1-rdbla0134_b19.5

Sequence:


               
               ATTCACACAGGAAATAATCCTTATCAATGCAGTGAATGTGGGAAAGCCTTTGGTAGGAAG
GAACAGCTCACAGCACATCTAAGAGCTCATGCAGGAGAAAAGCCCTATGGGTGCGGTGAA
TGTGGGAAGGCCTTCAGCAGCAAATCCTACCTTGTTATACACAGGAGAACACACACAGGA
GAAAGACCCTATGAGTGTAGTTTCTGTGAGAGGGCCTTTTGTGGGAAATCACAGCTCATT
ATACATCAGAGAACTCACTCAACAGAGAAGCCCTATGAATGCAGTGAATGTGAGAAAGCC
TATCCTAGGAAGGCATCACTTCAGATACACCAGAAAACTCATTCAGGAGAGAAGCCCTTT
AAATGCAGTGAATGTGGGAAAGCCTTCACTCAGAAGTCATCTCTCAGTGAACATCAGAGA
GTTCACACAGGAGAAAAACCATGGAAATGCTCTGAATGTGGGAAATCCTTCTGTTGGAAT
TCAGGGCTTCGTATACATCGAAAAACTCACAAGTGAAAAATCAGAACATAGTAGGTGTTG
AAAGCATCAACACAGAAGGTGGTCCTCAGCAGACTTCAGATGATAATATACAGGATATCT
AAGCAGGAAGTCCTAAGAACACACTCTTACCAAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCACACAGGAAATAATCCTTATCAATGCAGTGAATGTGGGAAAGCCTTTGGTAGGAAG
GAACAGCTCACAGCACATCTAAGAGCTCATGCAGGAGAAAAGCCCTATGGGTGCGGTGAA
TGTGGGAAGGCCTTCAGCAGCAAATCCTACCTTGTTATACACAGGAGAACACACACAGGA
GAAAGACCCTATGAGTGTAGTTTCTGTGAGAGGGCCTTTTGTGGGAAATCACAGCTCATT
ATACATCAGAGAACTCACTCAACAGAGAAGCCCTATGAATGCAGTGAATGTGAGAAAGCC
TATCCTAGGAAGGCATCACTTCAGATACACCAGAAAACTCATTCAGGAGAGAAGCCCTTT
AAATGCAGTGAATGTGGGAAAGCCTTCACTCAGAAGTCATCTCTCAGTGAACATCAGAGA
GTTCACACAGGAGAAAAACCATGGAAATGCTCTGAATGTGGGAAATCCTTCTGTTGGAAT
TCAGGGCTTCGTATACATCGAAAAACTCACAAGTGAAAAATCAGAACATAGTAGGTGTTG
AAAGCATCAACACAGAAGGTGGTCCTCAGCAGACTTCAGATGATAATATACAGGATATCT
AAGCAGGAAGTCCTAAGAACACACTCTTACCAAGTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|14198299|gb|AAH08211.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|14198299|gb|AAH08211.1|

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-520, gnl|bosTau2|chr10 (8996606-8996087)
               

               
               1-520, gnl|Hg17|chr19 (42818411-42817808)
               

               
               1-520, gnl|Mm7|chr2 (127310037-127309602)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-520, gnl|bosTau2|chr10 (8996606-8996087)
               

               
               1-520, gnl|Hg17|chr19 (42818411-42817808)
               

               
               1-520, gnl|Mm7|chr2 (127310037-127309602)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               mgp (0.230681)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               bla (0.124347)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               bla (0.124347)

	1-520, gnl\|bosTau2\|chr10 (8996606-8996087)
	1-520, gnl\|Hg17\|chr19 (42818411-42817808)
	1-520, gnl\|Mm7\|chr2 (127310037-127309602)