Ss1.1-rdbla0134_d16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGCGGGACGCACTGGAGTGTGTCGCCGGCAGACGCCCCCGGCGGGCCGCGTCCCGCCAT GAAGTTTCGGGCCAAGATTGTGGACGGGGCCTGTCTGAACCACTTCACCCGAGTCAGTAA CATGATAGCCAAGCTTGCCAAAACCTGCACGCTGCGCATCAGCCCGGATAAGTTGAATTT CATCCTCTCTGACAAGGTGGCCAATGGAGGGGTGAGCATGTGGTGTGAGCTGGAACAGGA GAACTTCTTCAGCGAATTTCAAATGGAAGGTGTCTCTGCACAAAACAACGAGATTTATTT AGAGCTAACGTCGGAAAATTTATCTCGAGCCTTGAAAACTGCCCAGAATGCCAGATCTTT GAAAATCAAGCTGACTAATAAACACTTTCCATGCCTCACAGTTTCTATAGAGCTGTTATC CTTGTCAAGCAGTAATCGCATTGTGACACATGACATACCCGTAAAGGTTATTCCTAGAAA ACTGTGGAAGGACTTACAGGAACCTACAGTCCCAGAGGCTGACGTTAGTATCTATTTACC AGCCTTGAAGACGATGAAAAGTGTTGTGGAAAAGATGAAAAACATCAGCAATCACCTTAT TATCGAAGCAAACCTAAATGGAGAATTGAACTTGAAAATAGAAACTGAACTAGTGTGTAT TACAACTCATTTTAAAGATCTTGGAAATCCTCCGTTAGCTTCTGAAAACACTTCTCAAGA TGGAAACTCAGAACAAATGGCTGAAGTGCAAATAGATATTAGGAAGCTCTTACAGTTTCT TGCTGGACAACAAGTAAATCCTACAAAGGCCACATGCAATATCGTGAGTAACAAGATCGT CCACTTTGACCTGCTCCACGAAGACGCTTCCCTGCAGTACTTCATCCCCGCGCTGTCATA GCACCCCCTCCCTGGACGGGGCCCGGGACCTGGGTCTCAGCCCGAAGGCAGTGGGTGATG TCTGCTAAGTCATTGTCTCTGTCCTCACAGCCATCCGGTGTGTTTTTACTTTTTCCTTCT ATAATATTTTAACTAGAAATTGAATTAATGAAATACAGTAGGATATAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGCGGGACGCACTGGAGTGTGTCGCCGGCAGACGCCCCCGGCGGGCCGCGTCCCGCCAT GAAGTTTCGGGCCAAGATTGTGGACGGGGCCTGTCTGAACCACTTCACCCGAGTCAGTAA CATGATAGCCAAGCTTGCCAAAACCTGCACGCTGCGCATCAGCCCGGATAAGTTGAATTT CATCCTCTCTGACAAGGTGGCCAATGGAGGGGTGAGCATGTGGTGTGAGCTGGAACAGGA GAACTTCTTCAGCGAATTTCAAATGGAAGGTGTCTCTGCACAAAACAACGAGATTTATTT AGAGCTAACGTCGGAAAATTTATCTCGAGCCTTGAAAACTGCCCAGAATGCCAGATCTTT GAAAATCAAGCTGACTAATAAACACTTTCCATGCCTCACAGTTTCTATAGAGCTGTTATC CTTGTCAAGCAGTAATCGCATTGTGACACATGACATACCCGTAAAGGTTATTCCTAGAAA ACTGTGGAAGGACTTACAGGAACCTACAGTCCCAGAGGCTGACGTTAGTATCTATTTACC AGCCTTGAAGACGATGAAAAGTGTTGTGGAAAAGATGAAAAACATCAGCAATCACCTTAT TATCGAAGCAAACCTAAATGGAGAATTGAACTTGAAAATAGAAACTGAACTAGTGTGTAT TACAACTCATTTTAAAGATCTTGGAAATCCTCCGTTAGCTTCTGAAAACACTTCTCAAGA TGGAAACTCAGAACAAATGGCTGAAGTGCAAATAGATATTAGGAAGCTCTTACAGTTTCT TGCTGGACAACAAGTAAATCCTACAAAGGCCACATGCAATATCGTGAGTAACAAGATCGT CCACTTTGACCTGCTCCACGAAGACGCTTCCCTGCAGTACTTCATCCCCGCGCTGTCATA GCACCCCCTCCCTGGACGGGGCCCGGGACCTGGGTCTCAGCCCGAAGGCAGTGGGTGATG TCTGCTAAGTCATTGTCTCTGTCCTCACAGCCATCCGGTGTGTTTTTACTTTTTCCTTCT ATAATATTTTAACTAGAAATTGAATTAATGAAATACAGTAGGATATAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 237-415, gnl|bosTau2|chr4 (43917431-43917253) | |
| 237-415, gnl|canFam2|chr16 (3096509-3096328) | |
| 237-415, gnl|danRer3|chrNA (171348830-171348649) | |
| 237-415, gnl|dasNov1|scaffold_3414 (6011-6192) | |
| 237-415, gnl|echTel1|scaffold_298366 (787-612) | |
| 237-415, gnl|galGal2|chr2 (55150355-55150536) | |
| 237-415, gnl|hg17|chr7 (47791255-47791436) | |
| 237-415, gnl|Hg17|chr7 (47791432-47791254) | |
| 237-415, gnl|loxAfr1|scaffold_29203 (1172-1353) | |
| 237-415, gnl|mm7|chr11 (8962250-8962431) | |
| 237-415, gnl|Mm7|chr11 (8962427-8962249) | |
| 237-415, gnl|monDom2|scaffold_5 (64421638-64421457) | |
| 237-415, gnl|oryCun1|scaffold_82184 (5314-5160) | |
| 237-415, gnl|panTro1|chr6 (49261106-49261287) | |
| 237-415, gnl|rheMac2|chr3 (78493213-78493032) | |
| 237-415, gnl|rn3|chr14 (89560932-89561113) | |
| 237-415, gnl|tetNig1|chrUn_random (1189813-1189994) | |
| 237-415, gnl|xenTro1|scaffold_26 (2098576-2098757) | |
| 695-821, gnl|bosTau2|chr4 (43908622-43908496) | |
| 695-821, gnl|canFam2|chr16 (3104893-3104805) | |
| 695-821, gnl|canFam2|chr35 (4057715-4057823) | |
| 695-821, gnl|danRer3|chrNA (171349852-171349764) | |
| 695-821, gnl|danRer3|chrNA (171349850-171349723) | |
| 695-821, gnl|dasNov1|scaffold_37788 (12684-12772) | |
| 695-821, gnl|dasNov1|scaffold_7498 (5723-5820) | |
| 695-821, gnl|echTel1|scaffold_220693 (3999-3911) | |
| 695-821, gnl|echTel1|scaffold_298366 (1185-1058) | |
| 695-821, gnl|galGal2|chr2 (55146033-55146121) | |
| 695-821, gnl|hg17|chr6 (601186-601313) | |
| 695-821, gnl|hg17|chr7 (47780639-47780727) | |
| 695-821, gnl|Hg17|chr7 (47780766-47780640) | |
| 695-821, gnl|loxAfr1|scaffold_46408 (3615-3527) | |
| 695-821, gnl|loxAfr1|scaffold_46408 (3612-3494) | |
| 695-821, gnl|mm7|chr11 (8950641-8950729) | |
| 695-821, gnl|Mm7|chr11 (8950768-8950642) | |
| 695-821, gnl|mm7|chr13 (30312469-30312596) | |
| 695-821, gnl|monDom2|scaffold_5 (64441322-64441234) | |
| 695-821, gnl|oryCun1|scaffold_16158 (1554-1693) | |
| 695-821, gnl|oryCun1|scaffold_173031 (58437-58525) | |
| 695-821, gnl|panTro1|chr5 (610862-610989) | |
| 695-821, gnl|panTro1|chr6 (49250469-49250557) | |
| 695-821, gnl|rheMac2|chr3 (78503872-78503784) | |
| 695-821, gnl|rheMac2|chr4 (517070-517194) | |
| 695-821, gnl|rn3|chr14 (89552470-89552558) | |
| 695-821, gnl|rn3|chr17 (39982518-39982391) | |
| 695-821, gnl|tetNig1|chrUn_random (1189026-1189114) | |
| 695-821, gnl|tetNig1|chrUn_random (1189028-1189251) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 237-415, gnl|bosTau2|chr4 (43917431-43917253) | |
| 237-415, gnl|canFam2|chr16 (3096509-3096328) | |
| 237-415, gnl|danRer3|chrNA (171348830-171348649) | |
| 237-415, gnl|dasNov1|scaffold_3414 (6011-6192) | |
| 237-415, gnl|echTel1|scaffold_298366 (787-612) | |
| 237-415, gnl|galGal2|chr2 (55150355-55150536) | |
| 237-415, gnl|hg17|chr7 (47791255-47791436) | |
| 237-415, gnl|Hg17|chr7 (47791432-47791254) | |
| 237-415, gnl|loxAfr1|scaffold_29203 (1172-1353) | |
| 237-415, gnl|mm7|chr11 (8962250-8962431) | |
| 237-415, gnl|Mm7|chr11 (8962427-8962249) | |
| 237-415, gnl|monDom2|scaffold_5 (64421638-64421457) | |
| 237-415, gnl|oryCun1|scaffold_82184 (5314-5160) | |
| 237-415, gnl|panTro1|chr6 (49261106-49261287) | |
| 237-415, gnl|rheMac2|chr3 (78493213-78493032) | |
| 237-415, gnl|rn3|chr14 (89560932-89561113) | |
| 237-415, gnl|tetNig1|chrUn_random (1189813-1189994) | |
| 237-415, gnl|xenTro1|scaffold_26 (2098576-2098757) | |
| 695-821, gnl|bosTau2|chr4 (43908622-43908496) | |
| 695-821, gnl|canFam2|chr16 (3104893-3104805) | |
| 695-821, gnl|canFam2|chr35 (4057715-4057823) | |
| 695-821, gnl|danRer3|chrNA (171349852-171349764) | |
| 695-821, gnl|danRer3|chrNA (171349850-171349723) | |
| 695-821, gnl|dasNov1|scaffold_37788 (12684-12772) | |
| 695-821, gnl|dasNov1|scaffold_7498 (5723-5820) | |
| 695-821, gnl|echTel1|scaffold_220693 (3999-3911) | |
| 695-821, gnl|echTel1|scaffold_298366 (1185-1058) | |
| 695-821, gnl|galGal2|chr2 (55146033-55146121) | |
| 695-821, gnl|hg17|chr6 (601186-601313) | |
| 695-821, gnl|hg17|chr7 (47780639-47780727) | |
| 695-821, gnl|Hg17|chr7 (47780766-47780640) | |
| 695-821, gnl|loxAfr1|scaffold_46408 (3615-3527) | |
| 695-821, gnl|loxAfr1|scaffold_46408 (3612-3494) | |
| 695-821, gnl|mm7|chr11 (8950641-8950729) | |
| 695-821, gnl|Mm7|chr11 (8950768-8950642) | |
| 695-821, gnl|mm7|chr13 (30312469-30312596) | |
| 695-821, gnl|monDom2|scaffold_5 (64441322-64441234) | |
| 695-821, gnl|oryCun1|scaffold_16158 (1554-1693) | |
| 695-821, gnl|oryCun1|scaffold_173031 (58437-58525) | |
| 695-821, gnl|panTro1|chr5 (610862-610989) | |
| 695-821, gnl|panTro1|chr6 (49250469-49250557) | |
| 695-821, gnl|rheMac2|chr3 (78503872-78503784) | |
| 695-821, gnl|rheMac2|chr4 (517070-517194) | |
| 695-821, gnl|rn3|chr14 (89552470-89552558) | |
| 695-821, gnl|rn3|chr17 (39982518-39982391) | |
| 695-821, gnl|tetNig1|chrUn_random (1189026-1189114) | |
| 695-821, gnl|tetNig1|chrUn_random (1189028-1189251) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| cte (0.29274) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| cje (0.165235) | |
| nco (0.161734) | |
| ski (0.146735) | |
| pty (0.142714) | |
| thg (0.126791) | |
| bla (0.124347) | |
| eje (0.0988338) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.29274) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| cje (0.165235) | |
| nco (0.161734) | |
| ski (0.146735) | |
| pty (0.142714) | |
| thg (0.126791) | |
| bla (0.124347) | |
| eje (0.0988338) |