Non-Coding RNA Search

Ss1.1-rdbla0134_e11.5

Sequence:


               
               TTCCCACCGCTGGGAGGACAACAAACGCGGGTCTGGCGGAGAGCGGCGGCGCTCGGAGAC
CGCGAGGCGACCGGGAGCGGCTGGGCCCCCGGCGGCGCGCCCCTCGGCCGGGCCGGGAGC
CGCGTCAGTCGGTGCCCCCAGCCGAACGCGGTTCGCCTCCCTCCGAGCGATCAGCTGTCC
GGAGTGTGACCAGAGGGCATGCGGGATCCACCAGAGGTGCCGCCGCCTGCTCTCGCAGGC
CGCGGATGAAGAAGAAAGCGCGGCCTCGCTCGGCCGGGAGCGAAGAGGTGACCCGGAACG
AAGAGGTGTCCCGGAGCGAAGAGGTGGTCCGAAGCGAAGAGGCGGCCCTGAGTGAAGAGG
TGGCCCGGAGCGAGGAAATGGCGGCAGCAGGGCTCAGCGTGACCGTCACCCACAGCAATG
AGAAGCATGATCTTCAGGTTATCCCACAAGAGGGCTGTAGTGAACCAATTGTCCAAGACC
TGGCCCAGGTTGTTGAAGAGGCCACAGGGGTCCCACTGCCTTTTCAGAAACTCATATTTA
AGGGAAAATCTCTGAAGGAAATGAAGACACCTTTGTCTGCACTTGGAATACAGAATGGTT
GCCGGATCATGTTAATTGGGAAAAAGAACAGTTCAGAAGAAGAAGTAGAACTAAAAAAGC
TGAAAGATTTGGAGAGATCTGTGGAGAAGATAGCTCACCAACTGGAAGAGTTGAATAAAG
AGCTTACTGGAATCCAGCAGGGTTTTCTGGCCAAGGATTTGCAAGCAGAAGCTCTCTGCA
AACTTGATAGGAGAATAAAAGCCACCATTGAGCAGTTTATGAAGATCTTGGAGGAGATTG
ACACACTGATTCTGCCAGAAAATTTCAAAGACAGTAGAATGAAAAGGAAGGGTTTGGTGA
AAAGGATTCAGGGTTTCCTAGCTGAGTGTGACACAGTGGAGCAGAACATCTGCCTGGAGA
CGGAGCGACTGCAGTCCACAAATTTGGCCCTGGCCGACTGAGGGGCAGCGGAGGAGGCTA
TGCTACCCTGAAGAATGGCTCCCCCAACTCTGCCCTCTCTGGAGCAGCAGTTACCTGCTT
TCTCCAGGGCTGCTGGGGACAGCTGGCCCATGGCTGGCGTTGCTTTTCTTACACCCGCTC
TCTGAACAAATGTCATCCATACAATCTTGAGCGTTCCCATCAGTTTTCTCATTCTATGTC
TGGGTATCTGTGCTGCCTAGCAGCCCACCTGGTCTGGAGGGGCCTCCCCTGCCCAGGTCT
TCCAGCTTTTTTGAACTTTGGGTCCTTTCTTCGGGCTGGCGAGTGCTCTCTCTTGTCCTC
AGGTGGTTCTGGGTTTATAGGCCATCCTGGTCTTCAGGTCCATGAGGCCTTTTTCCTCTG
TGACGTCATCATTCCATCTCTAAGTCAGGATCACCAGGAGGCTGCATCAGGTCAGGAATG
TTGGAAATGGCTCCGAACAAGTATTTGGCACACAGGTAGTCCAAGTGTCCCTTGTTGTGA
CCTCATTCTGGGACAGCTGGCTGAGTTGTTGGTTTATAGACCCTGTCCTCACTTCCCAGT
GACCCTGACCAGCCACAGGCCATGAATCTCCAGGGGCCATTCCTGGGAGTGGGGCCTGTG
ATTGATATGTGAACTTCCTTGTCCCCAAGCAAATCTCTAGAAGGTTCAAACCCAGAGTTT
ACTAAGTCTCTGCGAGAAACCAGGTCAGAACCATGGCTTAGGAGCGGTAGAGAGAGGAGC
TATGGGTAAAGCCAGCAGGTGGTGAGGGCAACCATAAACTTCTCAGGAGTTCCTTCAAAG
GCATTTCTGTTAACTGTACCCTTCTGAGATTTATATTTCCTTCAAGACTGTTTCTGTGTT
TTGTTGCCTTTTTTCCCTTTGCTGTTATTTGAAAAATAAAAGTTTATATACTTAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCCACCGCTGGGAGGACAACAAACGCGGGTCTGGCGGAGAGCGGCGGCGCTCGGAGAC
CGCGAGGCGACCGGGAGCGGCTGGGCCCCCGGCGGCGCGCCCCTCGGCCGGGCCGGGAGC
CGCGTCAGTCGGTGCCCCCAGCCGAACGCGGTTCGCCTCCCTCCGAGCGATCAGCTGTCC
GGAGTGTGACCAGAGGGCATGCGGGATCCACCAGAGGTGCCGCCGCCTGCTCTCGCAGGC
CGCGGATGAAGAAGAAAGCGCGGCCTCGCTCGGCCGGGAGCGAAGAGGTGACCCGGAACG
AAGAGGTGTCCCGGAGCGAAGAGGTGGTCCGAAGCGAAGAGGCGGCCCTGAGTGAAGAGG
TGGCCCGGAGCGAGGAAATGGCGGCAGCAGGGCTCAGCGTGACCGTCACCCACAGCAATG
AGAAGCATGATCTTCAGGTTATCCCACAAGAGGGCTGTAGTGAACCAATTGTCCAAGACC
TGGCCCAGGTTGTTGAAGAGGCCACAGGGGTCCCACTGCCTTTTCAGAAACTCATATTTA
AGGGAAAATCTCTGAAGGAAATGAAGACACCTTTGTCTGCACTTGGAATACAGAATGGTT
GCCGGATCATGTTAATTGGGAAAAAGAACAGTTCAGAAGAAGAAGTAGAACTAAAAAAGC
TGAAAGATTTGGAGAGATCTGTGGAGAAGATAGCTCACCAACTGGAAGAGTTGAATAAAG
AGCTTACTGGAATCCAGCAGGGTTTTCTGGCCAAGGATTTGCAAGCAGAAGCTCTCTGCA
AACTTGATAGGAGAATAAAAGCCACCATTGAGCAGTTTATGAAGATCTTGGAGGAGATTG
ACACACTGATTCTGCCAGAAAATTTCAAAGACAGTAGAATGAAAAGGAAGGGTTTGGTGA
AAAGGATTCAGGGTTTCCTAGCTGAGTGTGACACAGTGGAGCAGAACATCTGCCTGGAGA
CGGAGCGACTGCAGTCCACAAATTTGGCCCTGGCCGACTGAGGGGCAGCGGAGGAGGCTA
TGCTACCCTGAAGAATGGCTCCCCCAACTCTGCCCTCTCTGGAGCAGCAGTTACCTGCTT
TCTCCAGGGCTGCTGGGGACAGCTGGCCCATGGCTGGCGTTGCTTTTCTTACACCCGCTC
TCTGAACAAATGTCATCCATACAATCTTGAGCGTTCCCATCAGTTTTCTCATTCTATGTC
TGGGTATCTGTGCTGCCTAGCAGCCCACCTGGTCTGGAGGGGCCTCCCCTGCCCAGGTCT
TCCAGCTTTTTTGAACTTTGGGTCCTTTCTTCGGGCTGGCGAGTGCTCTCTCTTGTCCTC
AGGTGGTTCTGGGTTTATAGGCCATCCTGGTCTTCAGGTCCATGAGGCCTTTTTCCTCTG
TGACGTCATCATTCCATCTCTAAGTCAGGATCACCAGGAGGCTGCATCAGGTCAGGAATG
TTGGAAATGGCTCCGAACAAGTATTTGGCACACAGGTAGTCCAAGTGTCCCTTGTTGTGA
CCTCATTCTGGGACAGCTGGCTGAGTTGTTGGTTTATAGACCCTGTCCTCACTTCCCAGT
GACCCTGACCAGCCACAGGCCATGAATCTCCAGGGGCCATTCCTGGGAGTGGGGCCTGTG
ATTGATATGTGAACTTCCTTGTCCCCAAGCAAATCTCTAGAAGGTTCAAACCCAGAGTTT
ACTAAGTCTCTGCGAGAAACCAGGTCAGAACCATGGCTTAGGAGCGGTAGAGAGAGGAGC
TATGGGTAAAGCCAGCAGGTGGTGAGGGCAACCATAAACTTCTCAGGAGTTCCTTCAAAG
GCATTTCTGTTAACTGTACCCTTCTGAGATTTATATTTCCTTCAAGACTGTTTCTGTGTT
TTGTTGCCTTTTTTCCCTTTGCTGTTATTTGAAAAATAAAAGTTTATATACTTAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|55661644|emb|CAH72520.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|55661644|emb|CAH72520.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               592-715, - strand, RNAz p=0.997121

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               592-715, - strand, RNAz p=0.997121

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               182-1931, gnl|bosTau2|chr20 (9704916-9706679)
               

               
               182-1931, gnl|Hg17|chr9 (33254519-33244281)
               

               
               182-1931, gnl|Mm7|chr4 (41086515-41073471)
               


               
               499-715, gnl|bosTau2|chr19 (16631369-16631153)
               

               
               499-715, gnl|Hg17|chr17 (465746-466308)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               182-1931, gnl|bosTau2|chr20 (9704916-9706679)
               

               
               182-1931, gnl|Hg17|chr9 (33254519-33244281)
               

               
               182-1931, gnl|Mm7|chr4 (41086515-41073471)
               


               
               499-715, gnl|bosTau2|chr19 (16631369-16631153)
               

               
               499-715, gnl|Hg17|chr17 (465746-466308)

Expressed library(ies): 36 entry(ies)

More info

Expressed library(ies): 36 entry(ies)

Help | Less info


               
               tes (0.831255)
               

               
               nco (0.646935)
               

               
               sto (0.539471)
               

               
               eje (0.494169)
               

               
               pla (0.401016)
               

               
               ton (0.351)
               

               
               cut (0.339847)
               

               
               nje (0.33184)
               

               
               cje (0.330469)
               

               
               sme (0.305437)
               

               
               ssp (0.271039)
               

               
               ste (0.270416)
               

               
               cov (0.264306)
               

               
               ece (0.229305)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               mgm (0.180343)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

Expressed library(ies): 36 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.831255)
               

               
               nco (0.646935)
               

               
               sto (0.539471)
               

               
               eje (0.494169)
               

               
               pla (0.401016)
               

               
               ton (0.351)
               

               
               cut (0.339847)
               

               
               nje (0.33184)
               

               
               cje (0.330469)
               

               
               sme (0.305437)
               

               
               ssp (0.271039)
               

               
               ste (0.270416)
               

               
               cov (0.264306)
               

               
               ece (0.229305)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               mgm (0.180343)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

	182-1931, gnl\|bosTau2\|chr20 (9704916-9706679)
	182-1931, gnl\|Hg17\|chr9 (33254519-33244281)
	182-1931, gnl\|Mm7\|chr4 (41086515-41073471)

	499-715, gnl\|bosTau2\|chr19 (16631369-16631153)
	499-715, gnl\|Hg17\|chr17 (465746-466308)

	tes (0.831255)
	nco (0.646935)
	sto (0.539471)
	eje (0.494169)
	pla (0.401016)
	ton (0.351)
	cut (0.339847)
	nje (0.33184)
	cje (0.330469)
	sme (0.305437)
	ssp (0.271039)
	ste (0.270416)
	cov (0.264306)
	ece (0.229305)
	ldo (0.194005)
	nlu (0.191681)
	mgm (0.180343)
	ill (0.175593)
	rec (0.17307)
	duo (0.172801)
	eye (0.170503)
	csp (0.161186)
	cli (0.152812)
	eli (0.151814)
	spl (0.143184)
	pty (0.142714)
	che (0.136314)
	lyg (0.133103)
	nmm (0.132802)
	ute (0.132784)
	sug (0.127291)
	bla (0.124347)
	clu (0.119646)
	pgl (0.118483)
	ebs (0.118301)
	cty (0.10408)