Non-Coding RNA Search

Ss1.1-rdbla0134_o15.5

Sequence:


               
               TTTTTTTTTTTTTTTCCACAATTTCAAATATGAAGTTTAATAACTCTGTAACTCTGTTTA
ACAATTCTGTAACCATCATCTCTTTATTATAAAAATCCAGTCTTCCAAGACGAGTATCCC
TCATCAAATGGCACATTTCCTCTCTAAGTTCAGAAGTGGGGTTTACACCACCCCACTGTG
CTGTTCATCCCAGAGGAGGAACTGATGCCTTTCTGTTGCTGCCTGGAAATCAGCAAGCTG
CATGACAGCTATTTATCTATAATTTATTTCTAAGCACATTTTACCATAGTGATGTCGCAA
CCTAGATGTGATGACAGCCACACAAAGCATGTTAGTAGGCAGTGTTTTGCGATGTCACTG
AGAGGTGGCAACAGCATGTGCTCTCAAGTGGCCCTATGTCCTCCTTGCATCTTTCTCTCC
CAGACTTGGCTTTGCTCTACTCACAAGGGTTCAATGGCAGGCAAACAGGCTCTTATGGAA
TGGACAGCCGACCTCCCATGGCAATTTTTGAGTTGCTGGATTACATAGTCAATGAGCCTC
CTCCCAAACTACCCAGTGGAGTATTCAGCCTGGAATTTCAAGATTTTGTGAATAAATGCT
TAATAAAAAACCCTGCAGAGAGAGCCGATTTGAAGCAACTCATGGTTCATGCTTTCATCA
AAAGATCTGATGCTGAGGAAGTAGATTTTGCAGGTTGGCTCTGCTCCACCATCGGCCTTA
ACCAGCCCAGCACACCCACCCATGCGGCTGGTGTCTAAGCATTTGGGAAGTGGCAGAGTC
CCCTGCCCAGTGGCATGTCATGTTGCTTCTGGGCCTCTTTCCCATGCCTGTCTCTGTTCA
GACGTGCATTTCACCTGTGACAAAGGATGAAGAACATAGCATGTGCCAAAATCCTATTCG
TGTCATTTTTAATATTATTGTCCTTCTTATTACTACTGTTATTCCCCTAAGTGGATTGGC
TTCGTGCTTGGGGCTATTTTTGTGTATGTCAGTGATCAGAACATGTGCAGTGCTGAATTA
CAGTGAAACTTTGCTGACTATGGGCAGTCATTCTTACTGAAAACTGCACTGCTCTCCCAC
ACCGTGACTGGCTGGCCGCCTGTATTTTCAGGATTCTTTGACACTTGGTGGTACTTCATT
CTTGCCAGGTATACCTTCTTTCTAATTGAGTAGGAAGGGCCCTGTAAGATCCTTCACAGG
CAGTGCATGTGAAGCATGCTTTGCTGCTATGAAAATGAGCATCAGAAAGTGTTTATCACA
TTATTTTATTATGGTTTTGCTTTTGGTGTAGAAAACAGCAATTTCCATCAAAATCTAGCC
AGAGCCCTTCACTGCCATGATAGCTGGGGCTTCACCAGTCTGTCTACTGTGATGATTTGT
AGACTTCTGGTTGTATTTCTATATTTATTTTTAAATATACTGTGTGGGATATTTAGTGAT
ATGTCTCTTTAAGTTTGAATTAGTGTTTCTAAAATGGTGGAGTTACTTTGAATGTTACAA
ATGGATCAAGGCATTAAAATGTATGAGATTTATCTTTCCCCAAATTGAAGTACTGATGCT
ATTGTAAACAAAAGTGTGTATAGTGCCTAAAAACTGTATGAAAATCCTTTTACCATTTTA
ATCCAGATATTTAACAAATCTAAACTCTTATTCTAATAAATACACTATCAAATTCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTCCACAATTTCAAATATGAAGTTTAATAACTCTGTAACTCTGTTTA
ACAATTCTGTAACCATCATCTCTTTATTATAAAAATCCAGTCTTCCAAGACGAGTATCCC
TCATCAAATGGCACATTTCCTCTCTAAGTTCAGAAGTGGGGTTTACACCACCCCACTGTG
CTGTTCATCCCAGAGGAGGAACTGATGCCTTTCTGTTGCTGCCTGGAAATCAGCAAGCTG
CATGACAGCTATTTATCTATAATTTATTTCTAAGCACATTTTACCATAGTGATGTCGCAA
CCTAGATGTGATGACAGCCACACAAAGCATGTTAGTAGGCAGTGTTTTGCGATGTCACTG
AGAGGTGGCAACAGCATGTGCTCTCAAGTGGCCCTATGTCCTCCTTGCATCTTTCTCTCC
CAGACTTGGCTTTGCTCTACTCACAAGGGTTCAATGGCAGGCAAACAGGCTCTTATGGAA
TGGACAGCCGACCTCCCATGGCAATTTTTGAGTTGCTGGATTACATAGTCAATGAGCCTC
CTCCCAAACTACCCAGTGGAGTATTCAGCCTGGAATTTCAAGATTTTGTGAATAAATGCT
TAATAAAAAACCCTGCAGAGAGAGCCGATTTGAAGCAACTCATGGTTCATGCTTTCATCA
AAAGATCTGATGCTGAGGAAGTAGATTTTGCAGGTTGGCTCTGCTCCACCATCGGCCTTA
ACCAGCCCAGCACACCCACCCATGCGGCTGGTGTCTAAGCATTTGGGAAGTGGCAGAGTC
CCCTGCCCAGTGGCATGTCATGTTGCTTCTGGGCCTCTTTCCCATGCCTGTCTCTGTTCA
GACGTGCATTTCACCTGTGACAAAGGATGAAGAACATAGCATGTGCCAAAATCCTATTCG
TGTCATTTTTAATATTATTGTCCTTCTTATTACTACTGTTATTCCCCTAAGTGGATTGGC
TTCGTGCTTGGGGCTATTTTTGTGTATGTCAGTGATCAGAACATGTGCAGTGCTGAATTA
CAGTGAAACTTTGCTGACTATGGGCAGTCATTCTTACTGAAAACTGCACTGCTCTCCCAC
ACCGTGACTGGCTGGCCGCCTGTATTTTCAGGATTCTTTGACACTTGGTGGTACTTCATT
CTTGCCAGGTATACCTTCTTTCTAATTGAGTAGGAAGGGCCCTGTAAGATCCTTCACAGG
CAGTGCATGTGAAGCATGCTTTGCTGCTATGAAAATGAGCATCAGAAAGTGTTTATCACA
TTATTTTATTATGGTTTTGCTTTTGGTGTAGAAAACAGCAATTTCCATCAAAATCTAGCC
AGAGCCCTTCACTGCCATGATAGCTGGGGCTTCACCAGTCTGTCTACTGTGATGATTTGT
AGACTTCTGGTTGTATTTCTATATTTATTTTTAAATATACTGTGTGGGATATTTAGTGAT
ATGTCTCTTTAAGTTTGAATTAGTGTTTCTAAAATGGTGGAGTTACTTTGAATGTTACAA
ATGGATCAAGGCATTAAAATGTATGAGATTTATCTTTCCCCAAATTGAAGTACTGATGCT
ATTGTAAACAAAAGTGTGTATAGTGCCTAAAAACTGTATGAAAATCCTTTTACCATTTTA
ATCCAGATATTTAACAAATCTAAACTCTTATTCTAATAAATACACTATCAAATTCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q8CB46_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8CB46_MOUSE

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               693-886, - strand, RNAz p=0.553752
               

               
               1122-1274, - strand, RNAz p=0.997914
               

               
               1313-1470, + strand, RNAz p=0.883427

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               693-886, - strand, RNAz p=0.553752
               

               
               1122-1274, - strand, RNAz p=0.997914
               

               
               1313-1470, + strand, RNAz p=0.883427

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               64-468, gnl|bosTau2|chr17 (17310290-17309894)
               

               
               64-468, gnl|Hg17|chr15 (64572725-64573435)
               


               
               555-1695, gnl|bosTau2|chr17 (17289419-17288287)
               

               
               555-1695, gnl|Hg17|chr8 (30005756-30006897)
               

               
               555-1695, gnl|Mm7|chr9 (64219411-64213916)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               64-468, gnl|bosTau2|chr17 (17310290-17309894)
               

               
               64-468, gnl|Hg17|chr15 (64572725-64573435)
               


               
               555-1695, gnl|bosTau2|chr17 (17289419-17288287)
               

               
               555-1695, gnl|Hg17|chr8 (30005756-30006897)
               

               
               555-1695, gnl|Mm7|chr9 (64219411-64213916)

Expressed library(ies): 44 entry(ies)

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Expressed library(ies): 44 entry(ies)

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               ste (1.08167)
               

               
               fco (0.628832)
               

               
               hea (0.613497)
               

               
               rec (0.519211)
               

               
               kid (0.518941)
               

               
               cbl (0.45919)
               

               
               spc (0.340097)
               

               
               mga (0.32041)
               

               
               sme (0.305437)
               

               
               ski (0.29347)
               

               
               ldo (0.291008)
               

               
               hyp (0.285673)
               

               
               lyg (0.266205)
               

               
               ova (0.258264)
               

               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 44 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (1.08167)
               

               
               fco (0.628832)
               

               
               hea (0.613497)
               

               
               rec (0.519211)
               

               
               kid (0.518941)
               

               
               cbl (0.45919)
               

               
               spc (0.340097)
               

               
               mga (0.32041)
               

               
               sme (0.305437)
               

               
               ski (0.29347)
               

               
               ldo (0.291008)
               

               
               hyp (0.285673)
               

               
               lyg (0.266205)
               

               
               ova (0.258264)
               

               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	693-886, - strand, RNAz p=0.553752
	1122-1274, - strand, RNAz p=0.997914
	1313-1470, + strand, RNAz p=0.883427

	64-468, gnl\|bosTau2\|chr17 (17310290-17309894)
	64-468, gnl\|Hg17\|chr15 (64572725-64573435)

	555-1695, gnl\|bosTau2\|chr17 (17289419-17288287)
	555-1695, gnl\|Hg17\|chr8 (30005756-30006897)
	555-1695, gnl\|Mm7\|chr9 (64219411-64213916)

	ste (1.08167)
	fco (0.628832)
	hea (0.613497)
	rec (0.519211)
	kid (0.518941)
	cbl (0.45919)
	spc (0.340097)
	mga (0.32041)
	sme (0.305437)
	ski (0.29347)
	ldo (0.291008)
	hyp (0.285673)
	lyg (0.266205)
	ova (0.258264)
	bla (0.248694)
	tra (0.246184)
	cbe (0.239234)
	nms (0.213858)
	mas (0.210305)
	fcc (0.197785)
	aor (0.195274)
	sag (0.182715)
	sto (0.179824)
	gul (0.177588)
	cki (0.165235)
	cje (0.165235)
	tbr (0.154178)
	lun (0.150489)
	isp (0.150376)
	lin (0.145603)
	spl (0.143184)
	cst (0.140036)
	ssp (0.13552)
	pla (0.133672)
	ret (0.128733)
	sug (0.127291)
	thg (0.126791)
	cly (0.120642)
	eru (0.120048)
	pgl (0.118483)
	ebs (0.118301)
	med (0.116252)
	cty (0.10408)
	jej (0.0989218)