Non-Coding RNA Search

Ss1.1-rdbla0136_a16.5

Sequence:


               
               AGCCCAGAATCTGCTTCAGGATGTGAAAGACACTTTGAGCAGGAGTTGGGCTGTGAAGTT
AGACAAACCAGAGCCTCTCTCTTTGGACCTTCATACTGTGTGCAATGTTTCTGAGCGTTA
CTTTGATGTGAAGAAGATATTAAGGAGCCATCAAGTCAGTGTGACACTGGATCCAGATAC
AGCTCATTATGAACTAGTTCTATCTGAGGATCGGAGACAAGTGACTCGAGGATCCCCCCA
GGAGAATCTTGATAGTTCTTCTAGGAGATTTAGTGCCTTACCCTGTATCCTGGGCTGTGA
AGGCTTCACTTCAGGAAAATATTACTTTGAAGTGGATGTGGGAGAGGGAACTGGGTGGGA
TTTAGGAGTCTGCATGGAAAATGTGCAGAGGGACACTGGCCTGGTACAGACGCCTCAGTC
TGGATTCTGGGCCATCAGACTGTGCAAAAAGAAAGGCTATGTAGCGCTTACCTCTCCTCT
AACTTCCCTTCAACTGAGGGAGCAGCCCCTGGTCGTAGGGATTTTTCTGGACTGCGAGGC
TGGAGTTGTATCCTTTTACAACATGACTACTGGCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCCAGAATCTGCTTCAGGATGTGAAAGACACTTTGAGCAGGAGTTGGGCTGTGAAGTT
AGACAAACCAGAGCCTCTCTCTTTGGACCTTCATACTGTGTGCAATGTTTCTGAGCGTTA
CTTTGATGTGAAGAAGATATTAAGGAGCCATCAAGTCAGTGTGACACTGGATCCAGATAC
AGCTCATTATGAACTAGTTCTATCTGAGGATCGGAGACAAGTGACTCGAGGATCCCCCCA
GGAGAATCTTGATAGTTCTTCTAGGAGATTTAGTGCCTTACCCTGTATCCTGGGCTGTGA
AGGCTTCACTTCAGGAAAATATTACTTTGAAGTGGATGTGGGAGAGGGAACTGGGTGGGA
TTTAGGAGTCTGCATGGAAAATGTGCAGAGGGACACTGGCCTGGTACAGACGCCTCAGTC
TGGATTCTGGGCCATCAGACTGTGCAAAAAGAAAGGCTATGTAGCGCTTACCTCTCCTCT
AACTTCCCTTCAACTGAGGGAGCAGCCCCTGGTCGTAGGGATTTTTCTGGACTGCGAGGC
TGGAGTTGTATCCTTTTACAACATGACTACTGGCTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61837381|ref|XP_609506.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61837381|ref|XP_609506.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               239-358, + strand, RNAz p=0.587281

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               239-358, + strand, RNAz p=0.587281

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               160-576, gnl|bosTau2|chr12 (1728122-1728535)
               

               
               160-576, gnl|Hg17|chr6 (26616712-26617125)
               

               
               160-576, gnl|Mm7|chr13 (22825352-22824939)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               160-576, gnl|bosTau2|chr12 (1728122-1728535)
               

               
               160-576, gnl|Hg17|chr6 (26616712-26617125)
               

               
               160-576, gnl|Mm7|chr13 (22825352-22824939)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cje (0.165235)
               

               
               lnt (0.142308)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               cty (0.10408)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)
               

               
               lnt (0.142308)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               cty (0.10408)

	160-576, gnl\|bosTau2\|chr12 (1728122-1728535)
	160-576, gnl\|Hg17\|chr6 (26616712-26617125)
	160-576, gnl\|Mm7\|chr13 (22825352-22824939)

	cje (0.165235)
	lnt (0.142308)
	bla (0.124347)
	cly (0.120642)
	cty (0.10408)