Non-Coding RNA Search

Ss1.1-rdbla0136_d21.5

Sequence:


               
               CCTGAGTTTGGATTGAGGGGCCAGAAGGAAAAAGCTCCACGTGCCTCTGTGTCTGCGTGA
GCCAGAAGAGTTGTCCACGCAGATTAGCAGGCCAAGGTCTGAGCCACGGCAGCATTTTTA
TTTTCAGATTTTGATAACTGTTTGTATGTGTTAAAAACCAAAATGACATCTTTTTAAAGC
TTGTCCATAATAGACGTCTTTTATAGTGAAAAACACATGGGAAAAAAAAATCATCTATTT
TGATGCAGCATTTGATAATGATAAAACACCTCACACCTCACTCTTTATAGTGCACAAAAT
GAATGAGGTCTGGGCTAAGTAGAAAAAAGGTCAATGCTGTTTTTGTTTTGTTTTAGAATC
ATTACCTTTTACCATCTTTTAACCATCTATAGTAGACACACTATCATAGTTAACATAGTT
AAGTTTGGCACTTGTCTCAATTTATGTGAAGATTTGCTTCCGTTTTCCTACAGGCAGTCT
CTCTACTTCCTCACAATCCCACTGTGCAGGTGCTATTGTCGCTCTTGTCAATATTTTCAG
AAATGTTATTTTCTTTTAAGTGAAATTTCTAGCCTGCACTTTGATGTCATGTGTTCCCTT
TGTCTTTCAAACTCCAAGGTTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGAGTTTGGATTGAGGGGCCAGAAGGAAAAAGCTCCACGTGCCTCTGTGTCTGCGTGA
GCCAGAAGAGTTGTCCACGCAGATTAGCAGGCCAAGGTCTGAGCCACGGCAGCATTTTTA
TTTTCAGATTTTGATAACTGTTTGTATGTGTTAAAAACCAAAATGACATCTTTTTAAAGC
TTGTCCATAATAGACGTCTTTTATAGTGAAAAACACATGGGAAAAAAAAATCATCTATTT
TGATGCAGCATTTGATAATGATAAAACACCTCACACCTCACTCTTTATAGTGCACAAAAT
GAATGAGGTCTGGGCTAAGTAGAAAAAAGGTCAATGCTGTTTTTGTTTTGTTTTAGAATC
ATTACCTTTTACCATCTTTTAACCATCTATAGTAGACACACTATCATAGTTAACATAGTT
AAGTTTGGCACTTGTCTCAATTTATGTGAAGATTTGCTTCCGTTTTCCTACAGGCAGTCT
CTCTACTTCCTCACAATCCCACTGTGCAGGTGCTATTGTCGCTCTTGTCAATATTTTCAG
AAATGTTATTTTCTTTTAAGTGAAATTTCTAGCCTGCACTTTGATGTCATGTGTTCCCTT
TGTCTTTCAAACTCCAAGGTTCTC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               227-378, - strand, RNAz p=0.809862
               

               
               491-610, + strand, RNAz p=0.589085

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               227-378, - strand, RNAz p=0.809862
               

               
               491-610, + strand, RNAz p=0.589085

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_005962, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_005962, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-624, gnl|bosTau2|chr26 (19433651-19433023)
               

               
               1-624, gnl|Hg17|chr10 (112035505-112036139)
               

               
               1-624, gnl|Mm7|chr19 (53274380-53274980)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-624, gnl|bosTau2|chr26 (19433651-19433023)
               

               
               1-624, gnl|Hg17|chr10 (112035505-112036139)
               

               
               1-624, gnl|Mm7|chr19 (53274380-53274980)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	227-378, - strand, RNAz p=0.809862
	491-610, + strand, RNAz p=0.589085

	1-624, gnl\|bosTau2\|chr26 (19433651-19433023)
	1-624, gnl\|Hg17\|chr10 (112035505-112036139)
	1-624, gnl\|Mm7\|chr19 (53274380-53274980)