Non-Coding RNA Search

Ss1.1-rdbla0136_j21.5

Sequence:


               
               AAGAGATCCAAAAACTCAAGAAGCCACTGTTTTTGTGAATTCTTTTTGATTTTAGTACAA
ACCTTAATTTCTCAGAAACAGAACAGTTTTAAGGGTGATCGTTGTTGATTAGACCAAATG
TTGTGTAATAATTATGTGGTGGACTGATGCTGGAATTACTCCTGTAGGTATAAACTTCTA
TCTGAAGAGAAGATTTCTCCCAGGAAGTCTTTGTACAGCTTTAAGTTGTCTCAGATTCTC
TGAAAACATTTTTTAGAAAGCAAATTTTTATATTTGTTCAATTTCAGCTATACCCAAGTA
GATTTACATGTATATGGAGCAAATATTTTTAAAACTTTCTGTTTGTACATATTCTGCATG
TTTTATAATTTCAAAATGCATCACTTGCATAGGTATTTTTCCCATAAAAGATGATGAAAG
TTACTTGGAAAAAAAGAAACCCTTTTATTGTATAGGTCATTGAATCTAAGTAAGCTAGCG
GCTGTTTTTATTGGAATGACAATGTTCTTGGAAGGAGCAGCTTACAAGATACCTTGAATT
TGCAAACTGCAAAGTCTTTGCTTATTTGAAAATTTCATAGTGGGGACGTGAAACTGTATT
CTGTGCCTTCCATCATGATTTCCACATGAAAGCACTTCAAGGCACTGGATTTTAAGATAA
TGTTTTTGGAAAACTCAGAGCATATAGGTTTCTGAAATATCTCATGGACTCCCCCCCTTC
CCCCATGAAATTATTCTTATGGAAAAAAATTGCTTTTTTGTATGTAGAATAAGAAGTTTT
GTACTACAGTGATGCTATAGATACGTCTAACATAACTTTTACTTTTCCCTGTGAAAGCTG
TATGTCTGTGCTGTGACTGGCGCTCATTGCAATATTGTTGAATTCCACAATGTATGGATA
TTAAACTCTGACATACTGTCCCTTTTTTGTAAAACATAATTTCAGGCCCTTTTTTCTTGT
TTTATTTTTTAATGTTTTATTGCTTTATGAAAATGTTTAACCCTAAAACCCTTCTAGATT
ACCAATACTGTATAAAGAAGCAATTACCCTTAAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAGATCCAAAAACTCAAGAAGCCACTGTTTTTGTGAATTCTTTTTGATTTTAGTACAA
ACCTTAATTTCTCAGAAACAGAACAGTTTTAAGGGTGATCGTTGTTGATTAGACCAAATG
TTGTGTAATAATTATGTGGTGGACTGATGCTGGAATTACTCCTGTAGGTATAAACTTCTA
TCTGAAGAGAAGATTTCTCCCAGGAAGTCTTTGTACAGCTTTAAGTTGTCTCAGATTCTC
TGAAAACATTTTTTAGAAAGCAAATTTTTATATTTGTTCAATTTCAGCTATACCCAAGTA
GATTTACATGTATATGGAGCAAATATTTTTAAAACTTTCTGTTTGTACATATTCTGCATG
TTTTATAATTTCAAAATGCATCACTTGCATAGGTATTTTTCCCATAAAAGATGATGAAAG
TTACTTGGAAAAAAAGAAACCCTTTTATTGTATAGGTCATTGAATCTAAGTAAGCTAGCG
GCTGTTTTTATTGGAATGACAATGTTCTTGGAAGGAGCAGCTTACAAGATACCTTGAATT
TGCAAACTGCAAAGTCTTTGCTTATTTGAAAATTTCATAGTGGGGACGTGAAACTGTATT
CTGTGCCTTCCATCATGATTTCCACATGAAAGCACTTCAAGGCACTGGATTTTAAGATAA
TGTTTTTGGAAAACTCAGAGCATATAGGTTTCTGAAATATCTCATGGACTCCCCCCCTTC
CCCCATGAAATTATTCTTATGGAAAAAAATTGCTTTTTTGTATGTAGAATAAGAAGTTTT
GTACTACAGTGATGCTATAGATACGTCTAACATAACTTTTACTTTTCCCTGTGAAAGCTG
TATGTCTGTGCTGTGACTGGCGCTCATTGCAATATTGTTGAATTCCACAATGTATGGATA
TTAAACTCTGACATACTGTCCCTTTTTTGTAAAACATAATTTCAGGCCCTTTTTTCTTGT
TTTATTTTTTAATGTTTTATTGCTTTATGAAAATGTTTAACCCTAAAACCCTTCTAGATT
ACCAATACTGTATAAAGAAGCAATTACCCTTAAAAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               159-276, + strand, RNAz p=0.690159

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               159-276, + strand, RNAz p=0.690159

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_016654, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_016654, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1056, gnl|bosTau2|chr10 (41902542-41903595)
               

               
               1-1056, gnl|Hg17|chr15 (48357865-48356796)
               

               
               1-1056, gnl|Mm7|chr2 (126370824-126369814)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1056, gnl|bosTau2|chr10 (41902542-41903595)
               

               
               1-1056, gnl|Hg17|chr15 (48357865-48356796)
               

               
               1-1056, gnl|Mm7|chr2 (126370824-126369814)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               nlu (0.191681)
               

               
               fco (0.157208)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               bla (0.124347)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               fco (0.157208)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               bla (0.124347)

	1-1056, gnl\|bosTau2\|chr10 (41902542-41903595)
	1-1056, gnl\|Hg17\|chr15 (48357865-48356796)
	1-1056, gnl\|Mm7\|chr2 (126370824-126369814)

	nlu (0.191681)
	fco (0.157208)
	pla (0.133672)
	thg (0.126791)
	ese (0.126502)
	bla (0.124347)