Non-Coding RNA Search

Ss1.1-rdbla0138_l1.5

Sequence:


               
               CGAGAGTGTGCGCTGTCACTTGAATTTCGATCCTAACTCTGCTCCTGGGGTTGCAAGAGT
TTATGACTCAGTGCAGAGTAGTGGCCCCATGGTTGTGACAAGCCTTACAGAGGAGCTGAA
AAAACTTGCAAAACAAGGATGGTACTGGGGACCAATCACACGCTGGGAGGCGGAAGGGAA
GCTGGCAAATGTGCCAGACGGTTCTTTTCTTGTTCGGGACAGTTCTGATGACCGTTACCT
TTTAAGCTTGAGCTTTCGCTCCCATGGCAAAACCCTTCACACTAGAATTGAACATTCAAA
TGGTAGGTTTAGCTTTTATGAACAACCGGATGTGGAAGGACACACGTCGATAGTGGACCT
AATTGAACACTCAATCAGGGACTCTGAAAATGGGGCCTTTTGTTATTCAAGGTCTCGGTT
GCCTGGCTCTGCAACATACCCAGTGAGACTGACCAACCCCGTGTCGCGGTTCATGCAGGT
GCGCTCCCTGCAGTACCTGTGTCGTTTTGTTATACGTCAGTACACCAGAATAGACCTGAT
CCAGAAACTGCCTTTGCCAAACAAAATGAAGGATTATTTACAGGAGAAGCACTACTGAAA
GATGATGGGAACCCTGCATCTTGCACTTTGGGAGTAAGAAAAAGAGATTGAAATACAGTT
TACAGACTTCTCATTGCTATCAAAATCTTTTGCTGCCATACTATTTCAGTTGTATGTGTG
AAAGAGTAATCAGTTCTTTAGGGGTGGGGAAGTGTCCACAAGGTGTCTTGGGTTTATTTT
GGTTCTTTAAGAAAGGAAGTCTTGAGGTTTCAGAAGTGTGAATTATCTTTCATCAATGTG
CAGAATAATCAATGTGAATGATCAGATTCTCCTTACCCACCCACCCCCAGTCCTTTGCTG
CTATCCACTGTGATTTTTATGCATTAAAAAGCACATTTCATGTGTATTCAACCCTAAGTA
AAGGTGAATGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAGAGTGTGCGCTGTCACTTGAATTTCGATCCTAACTCTGCTCCTGGGGTTGCAAGAGT
TTATGACTCAGTGCAGAGTAGTGGCCCCATGGTTGTGACAAGCCTTACAGAGGAGCTGAA
AAAACTTGCAAAACAAGGATGGTACTGGGGACCAATCACACGCTGGGAGGCGGAAGGGAA
GCTGGCAAATGTGCCAGACGGTTCTTTTCTTGTTCGGGACAGTTCTGATGACCGTTACCT
TTTAAGCTTGAGCTTTCGCTCCCATGGCAAAACCCTTCACACTAGAATTGAACATTCAAA
TGGTAGGTTTAGCTTTTATGAACAACCGGATGTGGAAGGACACACGTCGATAGTGGACCT
AATTGAACACTCAATCAGGGACTCTGAAAATGGGGCCTTTTGTTATTCAAGGTCTCGGTT
GCCTGGCTCTGCAACATACCCAGTGAGACTGACCAACCCCGTGTCGCGGTTCATGCAGGT
GCGCTCCCTGCAGTACCTGTGTCGTTTTGTTATACGTCAGTACACCAGAATAGACCTGAT
CCAGAAACTGCCTTTGCCAAACAAAATGAAGGATTATTTACAGGAGAAGCACTACTGAAA
GATGATGGGAACCCTGCATCTTGCACTTTGGGAGTAAGAAAAAGAGATTGAAATACAGTT
TACAGACTTCTCATTGCTATCAAAATCTTTTGCTGCCATACTATTTCAGTTGTATGTGTG
AAAGAGTAATCAGTTCTTTAGGGGTGGGGAAGTGTCCACAAGGTGTCTTGGGTTTATTTT
GGTTCTTTAAGAAAGGAAGTCTTGAGGTTTCAGAAGTGTGAATTATCTTTCATCAATGTG
CAGAATAATCAATGTGAATGATCAGATTCTCCTTACCCACCCACCCCCAGTCCTTTGCTG
CTATCCACTGTGATTTTTATGCATTAAAAAGCACATTTCATGTGTATTCAACCCTAAGTA
AAGGTGAATGAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               41-200, - strand, RNAz p=0.719443
               

               
               834-949, + strand, RNAz p=0.727276

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-200, - strand, RNAz p=0.719443
               

               
               834-949, + strand, RNAz p=0.727276

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_004232, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_004232, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-972, gnl|bosTau2|chr2 (47548636-47549610)
               

               
               2-972, gnl|Hg17|chr18 (66143896-66144869)
               

               
               2-972, gnl|Mm7|chr18 (89192764-89191803)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-972, gnl|bosTau2|chr2 (47548636-47549610)
               

               
               2-972, gnl|Hg17|chr18 (66143896-66144869)
               

               
               2-972, gnl|Mm7|chr18 (89192764-89191803)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               bla (0.248694)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               ski (0.146735)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.248694)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               ski (0.146735)

	41-200, - strand, RNAz p=0.719443
	834-949, + strand, RNAz p=0.727276

	2-972, gnl\|bosTau2\|chr2 (47548636-47549610)
	2-972, gnl\|Hg17\|chr18 (66143896-66144869)
	2-972, gnl\|Mm7\|chr18 (89192764-89191803)

	bla (0.248694)
	mgp (0.230681)
	hea (0.204499)
	col (0.195008)
	ski (0.146735)