Non-Coding RNA Search

Ss1.1-rdbla0138_p22.5

Sequence:


               
               TTTGCAGAAAGAAGATATGTAGCTAAAACATGGAAGAAAGCATATGTTTTAAGGGATGTT
TTTAAAAATAGTAAAGTGTGACACCAGATTCCTTCCTTTCTAGAGTCCTTGAAATGAGTG
ACTTTTGTATTTTCAAGTCAATCTTTCCAGGATATCTGTTTCCAGGATAGAGTACAGATA
TGAGACAGATGTTAGCATATAGTAGATATTCAATAAGTATTTGTTGGTCTACTTGTGGAT
TGTACCACATGAAATTGCTAACATTAGATCAGCTGAAAATTGATTGCAATTAGTAGAGTT
GATATAAAGTATGTTTTTAGTTGTGCTGTTTAGAAATGTAACAGTATTATGTTCTTCAAG
CTTCAGTTTTCTTTGCTTATTGAGTTGTTATTGTTTTCCAGAAAAATAGATAATACAGTA
TCTTCAGAAGAACTGTGAATACTTTTCTTAATATCATTTCAAATTGGGACATACTGCAAA
TGAAATAGGTAGAAATATCAATTTGGCCTTAGAGGGCTCTGTCAGCAAAAGAACTACGCA
GTGGTGATTTGAAAAATCTTATTCTGGGGATCTGAATTCAAAAATGAGCCTCAGGAGTTC
AAAATCCATTTTAAGCAAAGAGCAATTAAAAGCCAAGATGAGAGCTAACTCCCAACAATT
CAAGGCCCTGCAACAAACAGGAGTTTCTACTGTGACTGGGAAAAGTGTAAAAATGGACCT
GAGAGTATCCTCTTGAGAGACGAACAAAAATGGAGGCAATTGGAGGTTCATTAAGATTCA
AAACAACAGAAATTCATTTTTGGAGTGGATCATAACCTGTGATCTCCCCCGACCCCCAAA
GGATACTATATGACAGTTGATAGAAGTTTGTACAGTGGTTGGCTGCTGGTGAAGCTTCCA
AACTTGAACCATCTTTGTCATTGTGGCCAAAAAAGTTCTGAAGACCATATGGTGATCTAC
AAAAGGGATAGTTACTACCATTTAAACCTTGAAATGACAGCAACAGCAATAGTGCCAAGA
AGTTAAAATTATGCATGAAAATGTCGATTAAATGTCCTTTCGTTAGGAAACATGAACCCA
CACTTTTACATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGCAGAAAGAAGATATGTAGCTAAAACATGGAAGAAAGCATATGTTTTAAGGGATGTT
TTTAAAAATAGTAAAGTGTGACACCAGATTCCTTCCTTTCTAGAGTCCTTGAAATGAGTG
ACTTTTGTATTTTCAAGTCAATCTTTCCAGGATATCTGTTTCCAGGATAGAGTACAGATA
TGAGACAGATGTTAGCATATAGTAGATATTCAATAAGTATTTGTTGGTCTACTTGTGGAT
TGTACCACATGAAATTGCTAACATTAGATCAGCTGAAAATTGATTGCAATTAGTAGAGTT
GATATAAAGTATGTTTTTAGTTGTGCTGTTTAGAAATGTAACAGTATTATGTTCTTCAAG
CTTCAGTTTTCTTTGCTTATTGAGTTGTTATTGTTTTCCAGAAAAATAGATAATACAGTA
TCTTCAGAAGAACTGTGAATACTTTTCTTAATATCATTTCAAATTGGGACATACTGCAAA
TGAAATAGGTAGAAATATCAATTTGGCCTTAGAGGGCTCTGTCAGCAAAAGAACTACGCA
GTGGTGATTTGAAAAATCTTATTCTGGGGATCTGAATTCAAAAATGAGCCTCAGGAGTTC
AAAATCCATTTTAAGCAAAGAGCAATTAAAAGCCAAGATGAGAGCTAACTCCCAACAATT
CAAGGCCCTGCAACAAACAGGAGTTTCTACTGTGACTGGGAAAAGTGTAAAAATGGACCT
GAGAGTATCCTCTTGAGAGACGAACAAAAATGGAGGCAATTGGAGGTTCATTAAGATTCA
AAACAACAGAAATTCATTTTTGGAGTGGATCATAACCTGTGATCTCCCCCGACCCCCAAA
GGATACTATATGACAGTTGATAGAAGTTTGTACAGTGGTTGGCTGCTGGTGAAGCTTCCA
AACTTGAACCATCTTTGTCATTGTGGCCAAAAAAGTTCTGAAGACCATATGGTGATCTAC
AAAAGGGATAGTTACTACCATTTAAACCTTGAAATGACAGCAACAGCAATAGTGCCAAGA
AGTTAAAATTATGCATGAAAATGTCGATTAAATGTCCTTTCGTTAGGAAACATGAACCCA
CACTTTTACATG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               143-262, - strand, RNAz p=0.971712

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               143-262, - strand, RNAz p=0.971712

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1092, gnl|bosTau2|chr10 (38875054-38873991)
               

               
               1-1092, gnl|Hg17|chr15 (53625101-53624006)
               

               
               1-1092, gnl|Mm7|chr9 (72978677-72980206)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1092, gnl|bosTau2|chr10 (38875054-38873991)
               

               
               1-1092, gnl|Hg17|chr15 (53625101-53624006)
               

               
               1-1092, gnl|Mm7|chr9 (72978677-72980206)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	1-1092, gnl\|bosTau2\|chr10 (38875054-38873991)
	1-1092, gnl\|Hg17\|chr15 (53625101-53624006)
	1-1092, gnl\|Mm7\|chr9 (72978677-72980206)

	bla (0.124347)
	tra (0.123092)
	eep (0.122564)
	med (0.116252)
	cty (0.10408)
	ldo (0.0970026)