Ss1.1-rdbla0139_k5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGCATTGTTGCCGTGAGCTGTGGTGTAGGTCACAGACGCAGCTCGGATCTGGTGTTGCT GTTTCTGTGGATAGGTCCGTGGCTACAGCTCCAGTTGGACCCCCAGCCTGGAAATGTACA TATGCCGCGGGTGTGGCCCTAAAAGACAAAAAAAAAAAATTAATGATTTTTATGTAAAAA GTATTTCCTGAAGGTAAAATTAGGATGGTCGTCAGACTTGCCGTTCTCCTTTCCTTCCCA TCTCTCTCTTGGTCTTCATGGACGAGACAAGTGAGAAAACCGCTGTCCTAGTAGAAAGCC TTGGGCAACCTCTGCTCTCCTACCTCCCCCCATGCTCCATGCTCATAATGTTGAGATAAT GGAAAAAGTGACTGGAAATTCCAAACCCAGGCTACTCTCTTTAGCTAAATGCCAGTAATT AAAATGTGCCTTTTGAAGATGTGTTCTTAATGGGATCAGTGGTTATGATGTGGGTACTGC TTTCATAAAACATTTTTTTTCAGTATTTTGAGAACTGCTTATATTAATTTTTATAATAGA AACTTCGTAAGTTGCTACTGTTTTATATCCTACAATTAAAATAGTGTGGAAATATTTTTA AATGGTCTGACCAGACCAGAAAAGTAAAGTTGAGATATTTAAGATGAGATTACAAGTCAA GTACAGTGATTATTTTTGTAAATTTTCATGGACTTCATTCTTATTTAAATATTGTGTTCA TTTTTTCAGTGAGTATATTTATAGTGTCAAACATGGTAGACTAGAGGTAATAAAAATCAT TGTCTTAAGACTAGATTTCTCCCGAAGTGTGTATATTGTCTATTTGGAATGTTTGTGAAC ACACTGATAAGTGATGCCAAAATATCATTTTCGTACTTCATGTGTTAGTAGTAAAGTTTA ATTCTTTATCACCCCAAAGGATGTATTTAACTGAAATCTTTATAATTCAGTTTTTTTTCA AATACATGCTGCCTTACTCTCCCCCAATTTTGTCAGCAATTGAAGACTGTGGAAACATTT TTTTTTTTTCCCAGTCTCGGGAAGAATTCGATTCACAACATTTCTTTTAAATTTAGAGTT TTGTACTAATGGAATTAAAGCCTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGCATTGTTGCCGTGAGCTGTGGTGTAGGTCACAGACGCAGCTCGGATCTGGTGTTGCT GTTTCTGTGGATAGGTCCGTGGCTACAGCTCCAGTTGGACCCCCAGCCTGGAAATGTACA TATGCCGCGGGTGTGGCCCTAAAAGACAAAAAAAAAAAATTAATGATTTTTATGTAAAAA GTATTTCCTGAAGGTAAAATTAGGATGGTCGTCAGACTTGCCGTTCTCCTTTCCTTCCCA TCTCTCTCTTGGTCTTCATGGACGAGACAAGTGAGAAAACCGCTGTCCTAGTAGAAAGCC TTGGGCAACCTCTGCTCTCCTACCTCCCCCCATGCTCCATGCTCATAATGTTGAGATAAT GGAAAAAGTGACTGGAAATTCCAAACCCAGGCTACTCTCTTTAGCTAAATGCCAGTAATT AAAATGTGCCTTTTGAAGATGTGTTCTTAATGGGATCAGTGGTTATGATGTGGGTACTGC TTTCATAAAACATTTTTTTTCAGTATTTTGAGAACTGCTTATATTAATTTTTATAATAGA AACTTCGTAAGTTGCTACTGTTTTATATCCTACAATTAAAATAGTGTGGAAATATTTTTA AATGGTCTGACCAGACCAGAAAAGTAAAGTTGAGATATTTAAGATGAGATTACAAGTCAA GTACAGTGATTATTTTTGTAAATTTTCATGGACTTCATTCTTATTTAAATATTGTGTTCA TTTTTTCAGTGAGTATATTTATAGTGTCAAACATGGTAGACTAGAGGTAATAAAAATCAT TGTCTTAAGACTAGATTTCTCCCGAAGTGTGTATATTGTCTATTTGGAATGTTTGTGAAC ACACTGATAAGTGATGCCAAAATATCATTTTCGTACTTCATGTGTTAGTAGTAAAGTTTA ATTCTTTATCACCCCAAAGGATGTATTTAACTGAAATCTTTATAATTCAGTTTTTTTTCA AATACATGCTGCCTTACTCTCCCCCAATTTTGTCAGCAATTGAAGACTGTGGAAACATTT TTTTTTTTTCCCAGTCTCGGGAAGAATTCGATTCACAACATTTCTTTTAAATTTAGAGTT TTGTACTAATGGAATTAAAGCCTT |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 184-395, - strand, RNAz p=0.590223 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 184-395, - strand, RNAz p=0.590223 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 157-532, gnl|bosTau2|chr6 (21724573-21724213) | |
| 157-532, gnl|canFam2|chr3 (87805775-87805433) | |
| 157-532, gnl|canFam2|chr3 (87805735-87805444) | |
| 157-532, gnl|dasNov1|scaffold_25671 (45819-45479) | |
| 157-532, gnl|dasNov1|scaffold_25671 (45790-45490) | |
| 157-532, gnl|hg17|chr1 (223773453-223773783) | |
| 157-532, gnl|hg17|chr4 (24956347-24956649) | |
| 157-532, gnl|Hg17|chr4 (24956347-24956718) | |
| 157-532, gnl|loxAfr1|scaffold_14190 (27060-27419) | |
| 157-532, gnl|loxAfr1|scaffold_14190 (27112-27408) | |
| 157-532, gnl|mm7|chr5 (52142037-52142341) | |
| 157-532, gnl|mm7|chr5 (52142073-52142330) | |
| 157-532, gnl|Mm7|chr5 (52142067-52142400) | |
| 157-532, gnl|monDom2|scaffold_10 (13538498-13538145) | |
| 157-532, gnl|oryCun1|scaffold_156918 (418-31) | |
| 157-532, gnl|oryCun1|scaffold_156918 (376-42) | |
| 157-532, gnl|panTro1|chr1 (207609573-207609903) | |
| 157-532, gnl|panTro1|chr3 (25530476-25530778) | |
| 157-532, gnl|rheMac2|chr1 (143090693-143090363) | |
| 157-532, gnl|rheMac2|chr5 (20037856-20038156) | |
| 157-532, gnl|rn3|chr14 (62977536-62977211) | |
| 157-532, gnl|rn3|chr14 (62977499-62977222) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 157-532, gnl|bosTau2|chr6 (21724573-21724213) | |
| 157-532, gnl|canFam2|chr3 (87805775-87805433) | |
| 157-532, gnl|canFam2|chr3 (87805735-87805444) | |
| 157-532, gnl|dasNov1|scaffold_25671 (45819-45479) | |
| 157-532, gnl|dasNov1|scaffold_25671 (45790-45490) | |
| 157-532, gnl|hg17|chr1 (223773453-223773783) | |
| 157-532, gnl|hg17|chr4 (24956347-24956649) | |
| 157-532, gnl|Hg17|chr4 (24956347-24956718) | |
| 157-532, gnl|loxAfr1|scaffold_14190 (27060-27419) | |
| 157-532, gnl|loxAfr1|scaffold_14190 (27112-27408) | |
| 157-532, gnl|mm7|chr5 (52142037-52142341) | |
| 157-532, gnl|mm7|chr5 (52142073-52142330) | |
| 157-532, gnl|Mm7|chr5 (52142067-52142400) | |
| 157-532, gnl|monDom2|scaffold_10 (13538498-13538145) | |
| 157-532, gnl|oryCun1|scaffold_156918 (418-31) | |
| 157-532, gnl|oryCun1|scaffold_156918 (376-42) | |
| 157-532, gnl|panTro1|chr1 (207609573-207609903) | |
| 157-532, gnl|panTro1|chr3 (25530476-25530778) | |
| 157-532, gnl|rheMac2|chr1 (143090693-143090363) | |
| 157-532, gnl|rheMac2|chr5 (20037856-20038156) | |
| 157-532, gnl|rn3|chr14 (62977536-62977211) | |
| 157-532, gnl|rn3|chr14 (62977499-62977222) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| amn (0.417711) | |
| mgm (0.360685) | |
| sin (0.349895) | |
| liv (0.292569) | |
| bla (0.248694) | |
| tra (0.246184) | |
| pgl (0.236967) | |
| tes (0.207814) | |
| eje (0.197668) | |
| cmu (0.186393) | |
| rec (0.17307) | |
| tbr (0.154178) | |
| eli (0.151814) | |
| fat (0.147427) | |
| ski (0.146735) | |
| lin (0.145603) | |
| nca (0.136874) | |
| thg (0.126791) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| mgm (0.360685) | |
| sin (0.349895) | |
| liv (0.292569) | |
| bla (0.248694) | |
| tra (0.246184) | |
| pgl (0.236967) | |
| tes (0.207814) | |
| eje (0.197668) | |
| cmu (0.186393) | |
| rec (0.17307) | |
| tbr (0.154178) | |
| eli (0.151814) | |
| fat (0.147427) | |
| ski (0.146735) | |
| lin (0.145603) | |
| nca (0.136874) | |
| thg (0.126791) |