Non-Coding RNA Search

Ss1.1-rdbla0140_f3.5

Sequence:


               
               AAGCTCCGTCCGGCGCCAGGGAGAGTGAGTGTGTATTTTCCCGGTCTTTCGACTACATCA
AGTTTTTTTCTACCCTGGTCGCATTTGGGTTAGTAACAGCTTCGGCGAGTTAGCCACTTC
CAGTGCCCCTTCCGGAGCCGGTAACCAGTTCCCCGGTGCGCTTGGATCTCCGCGCTGTCT
GGCCGGCTCTGCTGGATGGTGTGGCGCAGCCGCGCGCTGGGGTGCGGGTGCAGGCGCCAC
GGACTTTGCAGCCCAGGCTCACAGGAGGCGGCTGGAGACGCAGCCGATCCTGCGCAGTCT
TTGAGGAAGAAATGTCTTTTGTAAAAAGGAGTCCAAACCAAGAAATAATTTCCCAATTTC
ACCATTCAGCAGCAGAAGGGGATATTGCCAGATTAACATTAATACTCAGTCATTCTCCAT
CTCTTCTCAATGAAACTTCTGAAAATGGATGGACTGCTTTAATGTATGCTGCAAGGAATG
GGCACCCAGATGCTGTCCAATTTCTACTCGAGAAAGGGTGTGACAGATCGATTGTAAATA
AATCAAGACAGACTGCACTGGATATTGCTAAATTTTGGGGTTATAAGCATATAGCTAACT
TACTAGCTAATGCTAAAGGTGGGAAGAAGCCTTGGTTCCTAACCAGTGAAGTGGAAGAAT
GTGAAAATTATTTTAGCAGGACACTACTAGACCGGAAAAGTGAAAAAAGAAATAATTCTA
ACTGGTTATTAGCAAAAGAAAGCCATCCAGCCACAGTTTATATCCTTTTCTCAGATTTAA
ATCCCTTGGTTACTCTAGGTGGCAATAAAGAAAGTTTCCAACAGCCAGAAGTCAGGCTTT
GTCAGCTCAACTACACGGATATAAAGGATTATTTGGCTCAGCCTGAGAAGATCACCTTGA
TTTTCCTTGGAGTAGAACTCGAAATGAGAAAAGAATTATTTAATTATGCTGGGGAAATCT
CAAGAGAAGAAGAAGATGGGTTGGTTGCCTGGTTTGCTTTAGGTATAGATCCTGTTGCTG
CTGAAGAATTTAAGCAAAGACATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGCTCCGTCCGGCGCCAGGGAGAGTGAGTGTGTATTTTCCCGGTCTTTCGACTACATCA
AGTTTTTTTCTACCCTGGTCGCATTTGGGTTAGTAACAGCTTCGGCGAGTTAGCCACTTC
CAGTGCCCCTTCCGGAGCCGGTAACCAGTTCCCCGGTGCGCTTGGATCTCCGCGCTGTCT
GGCCGGCTCTGCTGGATGGTGTGGCGCAGCCGCGCGCTGGGGTGCGGGTGCAGGCGCCAC
GGACTTTGCAGCCCAGGCTCACAGGAGGCGGCTGGAGACGCAGCCGATCCTGCGCAGTCT
TTGAGGAAGAAATGTCTTTTGTAAAAAGGAGTCCAAACCAAGAAATAATTTCCCAATTTC
ACCATTCAGCAGCAGAAGGGGATATTGCCAGATTAACATTAATACTCAGTCATTCTCCAT
CTCTTCTCAATGAAACTTCTGAAAATGGATGGACTGCTTTAATGTATGCTGCAAGGAATG
GGCACCCAGATGCTGTCCAATTTCTACTCGAGAAAGGGTGTGACAGATCGATTGTAAATA
AATCAAGACAGACTGCACTGGATATTGCTAAATTTTGGGGTTATAAGCATATAGCTAACT
TACTAGCTAATGCTAAAGGTGGGAAGAAGCCTTGGTTCCTAACCAGTGAAGTGGAAGAAT
GTGAAAATTATTTTAGCAGGACACTACTAGACCGGAAAAGTGAAAAAAGAAATAATTCTA
ACTGGTTATTAGCAAAAGAAAGCCATCCAGCCACAGTTTATATCCTTTTCTCAGATTTAA
ATCCCTTGGTTACTCTAGGTGGCAATAAAGAAAGTTTCCAACAGCCAGAAGTCAGGCTTT
GTCAGCTCAACTACACGGATATAAAGGATTATTTGGCTCAGCCTGAGAAGATCACCTTGA
TTTTCCTTGGAGTAGAACTCGAAATGAGAAAAGAATTATTTAATTATGCTGGGGAAATCT
CAAGAGAAGAAGAAGATGGGTTGGTTGCCTGGTTTGCTTTAGGTATAGATCCTGTTGCTG
CTGAAGAATTTAAGCAAAGACATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55727048|emb|CAH90281.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55727048|emb|CAH90281.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               519-677, + strand, RNAz p=0.856993

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               519-677, + strand, RNAz p=0.856993

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               28-306, gnl|bosTau2|chr27 (8988725-8989000)
               

               
               28-306, gnl|Hg17|chr5 (102926369-102926063)
               


               
               519-1044, gnl|bosTau2|chr27 (8992137-8992662)
               

               
               519-1044, gnl|Hg17|chr5 (102923067-102922542)
               

               
               519-1044, gnl|Mm7|chr17 (57216281-57215756)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               28-306, gnl|bosTau2|chr27 (8988725-8989000)
               

               
               28-306, gnl|Hg17|chr5 (102926369-102926063)
               


               
               519-1044, gnl|bosTau2|chr27 (8992137-8992662)
               

               
               519-1044, gnl|Hg17|chr5 (102923067-102922542)
               

               
               519-1044, gnl|Mm7|chr17 (57216281-57215756)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               bla (0.124347)
               

               
               jej (0.0989218)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.124347)
               

               
               jej (0.0989218)

	28-306, gnl\|bosTau2\|chr27 (8988725-8989000)
	28-306, gnl\|Hg17\|chr5 (102926369-102926063)

	519-1044, gnl\|bosTau2\|chr27 (8992137-8992662)
	519-1044, gnl\|Hg17\|chr5 (102923067-102922542)
	519-1044, gnl\|Mm7\|chr17 (57216281-57215756)