Non-Coding RNA Search

Ss1.1-rdbla0140_i20.5

Sequence:


               
               CTTATCTCCAAAATGTACTAACATAGTGGAACAGTTGTTAAAACCTTTAAAAGAGTGTTA
ATGCTGTCTCTCAGCCTTTTTATCTTTCAAAACCTAATAGTGTTTTTACATCATCATATA
AGGGCAGGGCGCCTTTCATCATTAATGCCGTTTACTTTTGGCATGGAAAGTAGGAATGTT
TGCTGGAGATGCTGGGATGGAAAAATTTGGAATGCAGTATTTCTAGCTGGGTTTGACACA
TGGGTGTTATTAATTCATTAATATAGTAAAAAATTTTTCTAATTTGGGGTGGTATGTCTC
AACAGCCTTTGCTTAATTGGTGATGGGCTAAGGAGGATGGATGTACGAGGGTAAATCAGC
CAACTTTCAGGGGCACTTCTGACATGCGCACAAAAATTCTAGATTAGAAATCTCAAGAAG
GAAAAGAGAAAGTCTCAGGAAGGCTGATAAAAAAGTTTGCAATGTAATAATGCCGTCTTG
GATAAACTTGACTCTTTGAACTTGCCCATTAGTAGACTGGCATAATTTAAGTAGTTTTGA
TGAATTAGAAGAAAACTTCACATGATAGACTAGAATGAGCTCAATTTGAAATGCCATTTA
AAAATAAGAGGAAGACATGAGTACTCTGCAGCAGGAGGACTGGCCAAGGAGGTCCTAATT
CATTCTGTATATTTATGCCTATTTCTGTACAGTAACATGCAGTTCACATCTGCTAAAGAA
TTCCTTTTGAAGTAGTCAGTAGTCAGATTCCAGTACGGGAGGGTGGCTGAATGCAATTTT
TGGAGTTATTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTATCTCCAAAATGTACTAACATAGTGGAACAGTTGTTAAAACCTTTAAAAGAGTGTTA
ATGCTGTCTCTCAGCCTTTTTATCTTTCAAAACCTAATAGTGTTTTTACATCATCATATA
AGGGCAGGGCGCCTTTCATCATTAATGCCGTTTACTTTTGGCATGGAAAGTAGGAATGTT
TGCTGGAGATGCTGGGATGGAAAAATTTGGAATGCAGTATTTCTAGCTGGGTTTGACACA
TGGGTGTTATTAATTCATTAATATAGTAAAAAATTTTTCTAATTTGGGGTGGTATGTCTC
AACAGCCTTTGCTTAATTGGTGATGGGCTAAGGAGGATGGATGTACGAGGGTAAATCAGC
CAACTTTCAGGGGCACTTCTGACATGCGCACAAAAATTCTAGATTAGAAATCTCAAGAAG
GAAAAGAGAAAGTCTCAGGAAGGCTGATAAAAAAGTTTGCAATGTAATAATGCCGTCTTG
GATAAACTTGACTCTTTGAACTTGCCCATTAGTAGACTGGCATAATTTAAGTAGTTTTGA
TGAATTAGAAGAAAACTTCACATGATAGACTAGAATGAGCTCAATTTGAAATGCCATTTA
AAAATAAGAGGAAGACATGAGTACTCTGCAGCAGGAGGACTGGCCAAGGAGGTCCTAATT
CATTCTGTATATTTATGCCTATTTCTGTACAGTAACATGCAGTTCACATCTGCTAAAGAA
TTCCTTTTGAAGTAGTCAGTAGTCAGATTCCAGTACGGGAGGGTGGCTGAATGCAATTTT
TGGAGTTATTGT

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               1-567, gnl|bosTau2|chr4 (20510773-20511340)
               

               
               1-567, gnl|Hg17|chr7 (106434734-106435332)
               


               
               598-790, gnl|bosTau2|chr4 (20511343-20511525)
               

               
               598-790, gnl|Hg17|chr7 (106435358-106435558)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-567, gnl|bosTau2|chr4 (20510773-20511340)
               

               
               1-567, gnl|Hg17|chr7 (106434734-106435332)
               


               
               598-790, gnl|bosTau2|chr4 (20511343-20511525)
               

               
               598-790, gnl|Hg17|chr7 (106435358-106435558)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nco (0.161734)
               

               
               bla (0.124347)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               bla (0.124347)

	1-567, gnl\|bosTau2\|chr4 (20510773-20511340)
	1-567, gnl\|Hg17\|chr7 (106434734-106435332)

	598-790, gnl\|bosTau2\|chr4 (20511343-20511525)
	598-790, gnl\|Hg17\|chr7 (106435358-106435558)