Non-Coding RNA Search

Ss1.1-rduo402b_o19.5

Sequence:


               
               GCAGCGACGCAGAGCGCACAGAGGCAGCGAAGCAGAGCTCACAGAGGACCTGTCGCCAAA
GCCCACGGCCATGGGTAGGGAACTGAAGGTGAAGATGCTGGGAGGCAAGGAGATCCTGGT
GCCCTTGAGGGACTGCATGATGGCATTGGACCTGAAGCAGCAGATCGCCCGGGAGATCGG
TGTGCCTGCCTTCCAGCAGCGTCTGGCCCACCCAGCCGGCAATGTGCTTCAGGATGGGGT
GCCCCTGGTCAACCAGGGCCTGGGCCCAGGCAGCATGGTCCTGTTGATGGTGCAGAGCTT
CAGAGACCCACTGAGCATCCTGGTGAGGAACGACAAGGGTCGCAGCAACGCCTATGAGGT
CTGGCTGACGCAGACAGTGGCTGAGCTCAAGCAGCAGGTGTGTCAGCAGGAGGGCGCGCA
AGCCGACCAGTTCTGGCTGACTTTCGAGGGGAAGCCCATGGAGGATGAGCACCAGCTGGG
GGAGTATGACCTCAAGCCTATGTGCACCGTGTACATGAATCTGCGCCTGCGGGGGGGCGG
GACAGGGCCAGGGGAGCACCCCACCGAGTGCTAGTAATAAAGCTGTGGCAAAATTGAGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGCGACGCAGAGCGCACAGAGGCAGCGAAGCAGAGCTCACAGAGGACCTGTCGCCAAA
GCCCACGGCCATGGGTAGGGAACTGAAGGTGAAGATGCTGGGAGGCAAGGAGATCCTGGT
GCCCTTGAGGGACTGCATGATGGCATTGGACCTGAAGCAGCAGATCGCCCGGGAGATCGG
TGTGCCTGCCTTCCAGCAGCGTCTGGCCCACCCAGCCGGCAATGTGCTTCAGGATGGGGT
GCCCCTGGTCAACCAGGGCCTGGGCCCAGGCAGCATGGTCCTGTTGATGGTGCAGAGCTT
CAGAGACCCACTGAGCATCCTGGTGAGGAACGACAAGGGTCGCAGCAACGCCTATGAGGT
CTGGCTGACGCAGACAGTGGCTGAGCTCAAGCAGCAGGTGTGTCAGCAGGAGGGCGCGCA
AGCCGACCAGTTCTGGCTGACTTTCGAGGGGAAGCCCATGGAGGATGAGCACCAGCTGGG
GGAGTATGACCTCAAGCCTATGTGCACCGTGTACATGAATCTGCGCCTGCGGGGGGGCGG
GACAGGGCCAGGGGAGCACCCCACCGAGTGCTAGTAATAAAGCTGTGGCAAAATTGAGTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57086833|ref|XP_536714.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57086833|ref|XP_536714.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               188-304, - strand, RNAz p=0.971409

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               188-304, - strand, RNAz p=0.971409

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               73-557, gnl|bosTau2|chr16 (41280832-41280353)
               

               
               73-557, gnl|Hg17|chr1 (989430-989917)
               

               
               73-557, gnl|Mm7|chr17 (44535164-44534681)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               73-557, gnl|bosTau2|chr16 (41280832-41280353)
               

               
               73-557, gnl|Hg17|chr1 (989430-989917)
               

               
               73-557, gnl|Mm7|chr17 (44535164-44534681)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               duo (0.518403)
               

               
               hyp (0.142837)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.518403)
               

               
               hyp (0.142837)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	73-557, gnl\|bosTau2\|chr16 (41280832-41280353)
	73-557, gnl\|Hg17\|chr1 (989430-989917)
	73-557, gnl\|Mm7\|chr17 (44535164-44534681)