Non-Coding RNA Search

Ss1.1-rduo403b_n18.5

Sequence:


               
               ACCTCACACGTTTTCTTGCTTAATCCTCTAAAGCAAGATAGACTAAGAATCCTCCAGAAT
TCTCATTATTGTTGGGCAGTGCTCTTGAAGCCTTTCCACAAACCCTTCCAGGATGGAGTC
TTCTGCTACAGGTAGCGGTGAAAGTACAGATTGAACCGGGGTTGGGCATTGCAATGGAGA
AGATGACTTGCTCAGAGATCATCTTTCTAAAGCCAGTTCCAACAGTGGCTCCTTGTTAAA
ATGACTGAAGCTCTCCCAGTGATCCCCCCCCCCTGCAAAAAAAAAAAGTGCCTGGGGAAG
TGTATGTATGGTCTTCACTGTAGGCGTCTGTTCCCGTGAATGTTCTCGTCGGTTGGGTTA
GCATTTGACGTACTTTCAAGCGGCCCAGGGCCAGAAAGAGGTATGGCTGTTTTTCTCCCT
ACGGTGTCTACCATATGGACCATATGGTAAGTTCGTCTTATTCTTCTTTTGCTAGGCAAA
CCTGTATGTGGGGCTGGTGGTCATGTGTGGCTTTGTCCTGTTTGATACTCAACTGATTAT
TGAAAAGGCTGAAAATGGAGATAAAGATTATATCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCTCACACGTTTTCTTGCTTAATCCTCTAAAGCAAGATAGACTAAGAATCCTCCAGAAT
TCTCATTATTGTTGGGCAGTGCTCTTGAAGCCTTTCCACAAACCCTTCCAGGATGGAGTC
TTCTGCTACAGGTAGCGGTGAAAGTACAGATTGAACCGGGGTTGGGCATTGCAATGGAGA
AGATGACTTGCTCAGAGATCATCTTTCTAAAGCCAGTTCCAACAGTGGCTCCTTGTTAAA
ATGACTGAAGCTCTCCCAGTGATCCCCCCCCCCTGCAAAAAAAAAAAGTGCCTGGGGAAG
TGTATGTATGGTCTTCACTGTAGGCGTCTGTTCCCGTGAATGTTCTCGTCGGTTGGGTTA
GCATTTGACGTACTTTCAAGCGGCCCAGGGCCAGAAAGAGGTATGGCTGTTTTTCTCCCT
ACGGTGTCTACCATATGGACCATATGGTAAGTTCGTCTTATTCTTCTTTTGCTAGGCAAA
CCTGTATGTGGGGCTGGTGGTCATGTGTGGCTTTGTCCTGTTTGATACTCAACTGATTAT
TGAAAAGGCTGAAAATGGAGATAAAGATTATATCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               11-129, - strand, RNAz p=0.99639

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               11-129, - strand, RNAz p=0.99639

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               11-576, gnl|bosTau2|chr5 (21634748-21634208)
               

               
               11-576, gnl|Hg17|chr12 (48438865-48439371)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-576, gnl|bosTau2|chr5 (21634748-21634208)
               

               
               11-576, gnl|Hg17|chr12 (48438865-48439371)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               duo (0.172801)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               bla (0.124347)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               bla (0.124347)

	11-576, gnl\|bosTau2\|chr5 (21634748-21634208)
	11-576, gnl\|Hg17\|chr12 (48438865-48439371)