Ss1.1-rduo403b_p17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAGCTGAATAAAGACCTGGCTCTCCTCCAAAAGGAACATGAGGAGGAAGTGCAGAGTCT ACGCGCTCATCTGGGCAATAACGTAAATGTAGAGGTGGATGCTGCTCCGTCCCTGAACCT CAGCGCTATCATGAGTGAGATGAGGCAGAAATACGAAGCCATGGCCCAGGAGAACCTTCA GAAGGCCAAAGAACAGTTTCAGTTGCAGATTGAAACTCTGCAACAAGAAGTCACAGTGAG CACGGAAGAGTTAAAAGGAGCCAAAGATGAAGTAAAGAATCACAGACGCACCTACCAGAG CCTGGAGATAGAACTCCAGTCCCATCTCAGTACGAAAGCAGCTTTGGAGCATACGCTGGA GGAAACCAAAGCTCGTTATGGTGCCTATCTGGCCAAACTCCAGACACAGATAAACTCCCT GGAAGACCAGCTGGTGCAGATTCGGACCGATACAGAACACCAGATCAATGAGTATAATAT TCTCCTTGACATAAAGACCCGGCTTGAGCAGGAAATCGCTACCTACCGTCGCCTTCTAGA AGGAGAGGACTACAAAACTACAGAGTATCAGTTAAGCACCCTGGAGGAGAAAGATATAAA GAAAACCAGAAAGATTAAGACGGTTGTGCAAGAAGTAGTGGACGGCAAGGTTGTGTCATC TGAAGTCAAAGAAGTGGAAGAAAGTATATAAATGGCTGTCAGAAGATGCTGCTGCTGAGG TTTGGAAGAAATATAAGAAAGCGGCATCAGAAAGCACCATTAATGCTTCATAGTTATTGG GGGGGGGGAGCCCATTTACCAGTCTCTGTAATTGAATATAAATGTTTTAGTCACAGAAGC TGCAAATTGCCTGCAAAAATGAAATCCAGTGAGCACTGGGCTATTTAAAATATCATTACT GCCCGTTTGATCACAAAACGCATTAACCACAAGCTATAGATGACCTAACATCAATTCCTA ATGTTCCTGGAAATTACAGCCCATTTCAATTACACTAAACCTTACAGAGCAGAGGAGTCT ATGCAAAGAGCAAATGAATGTCTCTCTAATTCCTCCTGTTTCTGAATTGCAAAAATCTCG TTTCAGGATTCCTGAGTTAATTTCTTGGTTAATTTCATTGAATTTTCAATCACGATATAA TTCTGCTGGCTTTAACTCATATTTGCATTGTCTCCGCTGCCTTTAAAACTCAACTCGGCT CTGAATAATTTGAGAGCCCATTCCAGTCATCAGTGCTGAGCAGAAATCAGAATGAAATAT ATTATGCTTGAAATAGGAGTCGATTAAAAGCAAAATTAGTGAAACCCTTCGCAAGGCAGA ACGCTTCTCCTTTAACTGCATAAATCGCATAAATTGGGTCGGCGGGCACTCTCTTTCTTT ACATGGTGAATGTATGTTATGAAATGCTTCTCACTATTTTTTTAGTAACGGCTCTAATGA AATGTAATTCACGCACCATAAAATTCGTCCTTGTAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAGCTGAATAAAGACCTGGCTCTCCTCCAAAAGGAACATGAGGAGGAAGTGCAGAGTCT ACGCGCTCATCTGGGCAATAACGTAAATGTAGAGGTGGATGCTGCTCCGTCCCTGAACCT CAGCGCTATCATGAGTGAGATGAGGCAGAAATACGAAGCCATGGCCCAGGAGAACCTTCA GAAGGCCAAAGAACAGTTTCAGTTGCAGATTGAAACTCTGCAACAAGAAGTCACAGTGAG CACGGAAGAGTTAAAAGGAGCCAAAGATGAAGTAAAGAATCACAGACGCACCTACCAGAG CCTGGAGATAGAACTCCAGTCCCATCTCAGTACGAAAGCAGCTTTGGAGCATACGCTGGA GGAAACCAAAGCTCGTTATGGTGCCTATCTGGCCAAACTCCAGACACAGATAAACTCCCT GGAAGACCAGCTGGTGCAGATTCGGACCGATACAGAACACCAGATCAATGAGTATAATAT TCTCCTTGACATAAAGACCCGGCTTGAGCAGGAAATCGCTACCTACCGTCGCCTTCTAGA AGGAGAGGACTACAAAACTACAGAGTATCAGTTAAGCACCCTGGAGGAGAAAGATATAAA GAAAACCAGAAAGATTAAGACGGTTGTGCAAGAAGTAGTGGACGGCAAGGTTGTGTCATC TGAAGTCAAAGAAGTGGAAGAAAGTATATAAATGGCTGTCAGAAGATGCTGCTGCTGAGG TTTGGAAGAAATATAAGAAAGCGGCATCAGAAAGCACCATTAATGCTTCATAGTTATTGG GGGGGGGGAGCCCATTTACCAGTCTCTGTAATTGAATATAAATGTTTTAGTCACAGAAGC TGCAAATTGCCTGCAAAAATGAAATCCAGTGAGCACTGGGCTATTTAAAATATCATTACT GCCCGTTTGATCACAAAACGCATTAACCACAAGCTATAGATGACCTAACATCAATTCCTA ATGTTCCTGGAAATTACAGCCCATTTCAATTACACTAAACCTTACAGAGCAGAGGAGTCT ATGCAAAGAGCAAATGAATGTCTCTCTAATTCCTCCTGTTTCTGAATTGCAAAAATCTCG TTTCAGGATTCCTGAGTTAATTTCTTGGTTAATTTCATTGAATTTTCAATCACGATATAA TTCTGCTGGCTTTAACTCATATTTGCATTGTCTCCGCTGCCTTTAAAACTCAACTCGGCT CTGAATAATTTGAGAGCCCATTCCAGTCATCAGTGCTGAGCAGAAATCAGAATGAAATAT ATTATGCTTGAAATAGGAGTCGATTAAAAGCAAAATTAGTGAAACCCTTCGCAAGGCAGA ACGCTTCTCCTTTAACTGCATAAATCGCATAAATTGGGTCGGCGGGCACTCTCTTTCTTT ACATGGTGAATGTATGTTATGAAATGCTTCTCACTATTTTTTTAGTAACGGCTCTAATGA AATGTAATTCACGCACCATAAAATTCGTCCTTGTAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 45-208, gnl|bosTau2|chr19 (33759186-33759349) | |
| 45-208, gnl|canFam2|chr9 (25142172-25141962) | |
| 45-208, gnl|danRer3|chr19 (1234117-1234336) | |
| 45-208, gnl|dasNov1|scaffold_6415 (34651-34862) | |
| 45-208, gnl|echTel1|scaffold_304527 (8174-7958) | |
| 45-208, gnl|fr1|chrUn (253387829-253387610) | |
| 45-208, gnl|galGal2|chr27_random (624041-623831) | |
| 45-208, gnl|hg17|chr17 (36289844-36290055) | |
| 45-208, gnl|Hg17|chr17 (36290041-36289878) | |
| 45-208, gnl|loxAfr1|scaffold_21710 (51104-50893) | |
| 45-208, gnl|mm7|chr11 (99541195-99541398) | |
| 45-208, gnl|Mm7|chr11 (99541384-99541221) | |
| 45-208, gnl|monDom2|scaffold_18 (50391049-50391265) | |
| 45-208, gnl|oryCun1|scaffold_173998 (20078-20283) | |
| 45-208, gnl|panTro1|chr19 (39539654-39539865) | |
| 45-208, gnl|rheMac2|chr16 (50997078-50997289) | |
| 45-208, gnl|rn3|chr10 (88353973-88354176) | |
| 45-208, gnl|tetNig1|chrUn_random (27408413-27408221) | |
| 45-208, gnl|xenTro1|scaffold_574 (136096-136296) | |
| 334-549, gnl|bosTau2|chr19 (33761400-33761615) | |
| 334-549, gnl|Hg17|chr17 (36288144-36287929) | |
| 334-549, gnl|Mm7|chr11 (99540013-99539798) | |
| 735-961, gnl|bosTau2|chr19 (33763253-33763484) | |
| 735-961, gnl|canFam2|chr9 (25146563-25146038) | |
| 735-961, gnl|dasNov1|scaffold_6415 (31353-31865) | |
| 735-961, gnl|hg17|chr17 (36285584-36286122) | |
| 735-961, gnl|Hg17|chr17 (36286067-36285788) | |
| 735-961, gnl|loxAfr1|scaffold_130599 (4574-5096) | |
| 735-961, gnl|mm7|chr11 (99537623-99538005) | |
| 735-961, gnl|monDom2|scaffold_18 (50383857-50384533) | |
| 735-961, gnl|oryCun1|scaffold_173998 (15596-16117) | |
| 735-961, gnl|panTro1|chr19 (39535394-39535931) | |
| 735-961, gnl|rheMac2|chr16 (50992835-50993361) | |
| 735-961, gnl|rn3|chr10 (88350048-88350422) | |
| 994-1476, gnl|bosTau2|chr19 (33763480-33763976) | |
| 994-1476, gnl|Hg17|chr17 (36285792-36285294) | |
| 994-1476, gnl|Mm7|chr11 (99537804-99537354) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 45-208, gnl|bosTau2|chr19 (33759186-33759349) | |
| 45-208, gnl|canFam2|chr9 (25142172-25141962) | |
| 45-208, gnl|danRer3|chr19 (1234117-1234336) | |
| 45-208, gnl|dasNov1|scaffold_6415 (34651-34862) | |
| 45-208, gnl|echTel1|scaffold_304527 (8174-7958) | |
| 45-208, gnl|fr1|chrUn (253387829-253387610) | |
| 45-208, gnl|galGal2|chr27_random (624041-623831) | |
| 45-208, gnl|hg17|chr17 (36289844-36290055) | |
| 45-208, gnl|Hg17|chr17 (36290041-36289878) | |
| 45-208, gnl|loxAfr1|scaffold_21710 (51104-50893) | |
| 45-208, gnl|mm7|chr11 (99541195-99541398) | |
| 45-208, gnl|Mm7|chr11 (99541384-99541221) | |
| 45-208, gnl|monDom2|scaffold_18 (50391049-50391265) | |
| 45-208, gnl|oryCun1|scaffold_173998 (20078-20283) | |
| 45-208, gnl|panTro1|chr19 (39539654-39539865) | |
| 45-208, gnl|rheMac2|chr16 (50997078-50997289) | |
| 45-208, gnl|rn3|chr10 (88353973-88354176) | |
| 45-208, gnl|tetNig1|chrUn_random (27408413-27408221) | |
| 45-208, gnl|xenTro1|scaffold_574 (136096-136296) | |
| 334-549, gnl|bosTau2|chr19 (33761400-33761615) | |
| 334-549, gnl|Hg17|chr17 (36288144-36287929) | |
| 334-549, gnl|Mm7|chr11 (99540013-99539798) | |
| 735-961, gnl|bosTau2|chr19 (33763253-33763484) | |
| 735-961, gnl|canFam2|chr9 (25146563-25146038) | |
| 735-961, gnl|dasNov1|scaffold_6415 (31353-31865) | |
| 735-961, gnl|hg17|chr17 (36285584-36286122) | |
| 735-961, gnl|Hg17|chr17 (36286067-36285788) | |
| 735-961, gnl|loxAfr1|scaffold_130599 (4574-5096) | |
| 735-961, gnl|mm7|chr11 (99537623-99538005) | |
| 735-961, gnl|monDom2|scaffold_18 (50383857-50384533) | |
| 735-961, gnl|oryCun1|scaffold_173998 (15596-16117) | |
| 735-961, gnl|panTro1|chr19 (39535394-39535931) | |
| 735-961, gnl|rheMac2|chr16 (50992835-50993361) | |
| 735-961, gnl|rn3|chr10 (88350048-88350422) | |
| 994-1476, gnl|bosTau2|chr19 (33763480-33763976) | |
| 994-1476, gnl|Hg17|chr17 (36285792-36285294) | |
| 994-1476, gnl|Mm7|chr11 (99537804-99537354) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| sin (2.97411) | |
| col (2.92512) | |
| duo (2.41922) | |
| lin (1.89284) | |
| ill (1.05356) | |
| jej (0.989218) | |
| rec (0.865351) | |
| mas (0.42061) | |
| ret (0.128733) | |
| eje (0.0988338) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sin (2.97411) | |
| col (2.92512) | |
| duo (2.41922) | |
| lin (1.89284) | |
| ill (1.05356) | |
| jej (0.989218) | |
| rec (0.865351) | |
| mas (0.42061) | |
| ret (0.128733) | |
| eje (0.0988338) |